# libraries used for analysis
library(edgeR)
library(limma)
library(quadprog)
library(ruv)
# libraries required for graphics
library(ggplot2)
library(reshape2)
library(EDASeq)
library(RColorBrewer)
library(VennDiagram)
library(data.table)
library(dplyr)
library(stringr)
library(knitr)
library(pheatmap)
wd = "./"
colors <- c("#0571b0", "#ca0020")
We first produce a matrix of read counts after aligning to both the Human and Plasmodium falciparum 3D7 reference genome. Subread’s featureCounts program is then used to allocate reads to gene features using the gff file PlasmoDB-12.0_Pfalciparum3D7.gff from PlasmoDB. For both Subread programs the default options are used.
setwd(wd)
# # Next subreads featureCounts was used to allocate reads to genes. This
# was saved for re-use files <-
# Sys.glob('/home/users/allstaff/tonkin-hill.g/all_gene_analysis/alignment/*.sam')
# fc_genes_aligned_w_Pfhuman_withoutVivax <- featureCounts(files, annot.ext
# = './data/PlasmoDB-12.0_Pfalciparum3D7.gff' , isPairedEnd=TRUE,
# isGTFAnnotationFile=TRUE, GTF.attrType='ID', GTF.featureType='gene' ,
# nthreads=15)
# Load gene ID mappings which we use later on.
geneID_mappings <- fread("./data/geneID_mappings.txt", data.table = FALSE, stringsAsFactors = FALSE)
trim <- function(x) gsub("^\\s+|\\s+$", "", x)
s <- str_split(as.character(geneID_mappings$`[Previous ID(s)]`), ",")
geneID_mappings <- data.frame(current = rep(geneID_mappings$`[Gene ID]`, sapply(s,
FUN = length)), old = unlist(s))
geneID_mappings$old <- str_trim(geneID_mappings$old)
# Load read counts (if featureCounts has been run previously)
load("./data/fc_genes_with_all_samples_aligned_human_Pf_WithOutVivax_subread_uH.RData")
fc2 <- fc_genes_aligned_w_Pfhuman_withoutVivax
t <- fc2$counts
# Rename samples to something more sensible colnames(t) <-
# gsub('alignment\\.sam','',colnames(t)) colnames(t) <-
# gsub('.*vivax\\.','',colnames(t)) colnames(t) <- gsub('_S.*','',
# colnames(t))
fc2$counts <- t
x <- DGEList(counts = fc2$counts, genes = fc2$annotation)
We next filter out genes that do not have sufficient coverage across our samples for reliable estimates to be made.
setwd(wd)
before <- nrow(x$counts)
keep <- rowSums(cpm(x) > 2) >= 10
x <- x[keep, , keep.lib.sizes = FALSE]
We require that there are at least 2 reads per million for at least 10 samples in order for a gene to be included in the analysis. This reduced the number of genes being considered from 5777 to 4144.
setwd(wd)
bplot <- melt(colSums(x$counts))
colnames(bplot) <- c("Read.Counts")
bplot$Sample <- rownames(bplot)
gg <- ggplot(bplot, aes(x = factor(Sample), y = Read.Counts)) + geom_bar(stat = "identity")
gg <- gg + theme_bw() + scale_y_sqrt(breaks = c(0, 10000, 1e+06, 1e+07, 1e+08))
gg <- gg + theme(axis.text.x = element_text(size = 12, angle = 90), axis.text.y = element_text(size = 12,
angle = 0), axis.title = element_text(size = 14, face = "bold"))
gg <- gg + labs(x = "Sample", y = "Read Count")
gg <- gg + geom_hline(aes(yintercept = 1e+06), col = "red")
x$counts <- x$counts[, !grepl("SFD1|SFM9|SFC\\.025", colnames(x$counts))]
filt.annnotation <- fc2$annotation[fc2$annotation$GeneID %in% rownames(x$counts),
]
dge <- DGEList(counts = x$counts, genes = filt.annnotation)
gg
Samples SFD1, SFM9 and SFC.025 were not sequenced to a sufficient depth to be reliable and thus are removed.
Samples SFU2 and SFU3 were drug treated and are removed. We repeated the analysis of the all gene DGE omitting a few patients who had anti-malarial treatments in preceding months. The patients omitted are: SFC 023, SFM007, IFM 012 and IFM 021.
x$counts <- x$counts[, !grepl("SFU2|SFU\\.3", colnames(x$counts))]
x$counts <- x$counts[, !grepl("SFC\\.023|SFM\\.7|IFM12|IFM21", colnames(x$counts))]
filt.annnotation <- fc2$annotation[fc2$annotation$GeneID %in% rownames(x$counts),
]
dge <- DGEList(counts = x$counts, genes = filt.annnotation)
Now we take the log transform of our sample counts (RPKM) to estimate the proportion of different stages present.
setwd(wd)
our_log_rpkm <- rpkm(dge)
our_log_rpkm <- log2(1 + our_log_rpkm)
To estimate the proportion of different life-cycle stages in each of our samples we require a reference data set. Su et al provide such a reference. They performed RNA-seq at two gametocyte stages, an ookinete stage and four time points of erythrocytic stages representing ring, early trophozoite, late trophozoite, and schizont. As we do not expect any ookinete stage parasites we discarded this reference. The data was downloaded from PlasmoDB and as such read counts were reported in RPKM. To handle outlying counts in a sensible manner a log2 transformation of the RPKM values was performed. This was also done for our gene counts. By next fitting a mixture model we can estimate the proportion of different parasite stages that make up our samples.
setwd(wd)
su_rpkm <- read.csv("./data/ rpkm_7SexualAndAsexualLifeStages_suetal.csv", header = TRUE,
sep = ",")
# ignore the Ookinete profile as this should be absent from our data.
su_rpkm$Ookinete <- NULL
rownames(su_rpkm) <- su_rpkm$ID
su_rpkm$ID <- NULL
# take the log transform of the data which helps to manage outlier genes.
su_log_rpkm <- log2(1 + su_rpkm)
Given a set of stages \(S\) and a set of genes \(g_i: i\in \{1,...,N\}\) we want to minimise
\[ \sum_{i=1}^N \left( g_{i,sample} - \sum_{s \in S} \pi_s g_{i,s} \right)^2 \]
Subject to constraints
\[ \sum_{s\in S} \pi_s = 1 \]
\[ \pi_s > 0 \]
Here \(\pi_s\) is proportion of stage \(s\) that is attributed to having contributed to our sample. This model was fit using R’s solve.QP function.
setwd(wd)
findMix <- function(Y, X) {
X[is.na(X)] <- t(replicate(ncol(X), apply(X, 1, mean, na.rm = T)))[is.na(X)]
Rinv <- solve(chol(t(X) %*% X))
C <- cbind(rep(1, ncol(X)), diag(ncol(X)))
b <- c(1, rep(0, ncol(X)))
d <- t(Y) %*% X
qp <- solve.QP(Dmat = Rinv, factorized = TRUE, dvec = d, Amat = C, bvec = b,
meq = 1)
sol <- qp$solution
sol[sol < 1e-10] <- 0
return(sol)
}
We fit this mixture model to each of our samples in turn. The results are then plotted. A column represents each sample in the plot below. As we are fitting proportion parameters each columns values must add to 1 over the 5 stages. Note that we have also combined the estimated proportions for the gametocyte samples into one gametocyte variable. The columns are coloured by phenotype.
setwd(wd)
# First get the intersection of the genes for the two datasets and order
# them by rowname.
inter <- intersect(rownames(our_log_rpkm), rownames(su_log_rpkm))
O <- our_log_rpkm[rownames(our_log_rpkm) %in% inter, ]
O <- O[order(rownames(O)), ]
S <- su_log_rpkm[rownames(su_log_rpkm) %in% inter, ]
S <- S[order(rownames(S)), ]
# Now lets fit some samples!
ourPlotData <- data.frame()
for (i in 1:ncol(O)) {
mix <- findMix(O[, i], as.matrix(S))
ourPlotData <- rbind(ourPlotData, data.frame(sample = rep(colnames(O)[i],
ncol(S)), stage = colnames(S), proportion = mix))
}
# Organise the results.
ourPlotData$stage <- gsub("Gametocyte.*", "Gametocyte", ourPlotData$stage)
ourPlotData <- aggregate(proportion ~ sample + stage, data = ourPlotData, FUN = sum)
ourPlotData <- within(ourPlotData, stage <- factor(stage, levels = c("Ring",
"Early.Trophozoite", "Late.Trophozoite", "Schizont", "Gametocyte")))
ourPlotData$phenotype <- ifelse(substring(ourPlotData$sample, 1, 1) == "I",
"non-severe", "severe")
# Make a pretty plot.
gg <- ggplot(ourPlotData, aes(x = factor(sample), y = proportion, fill = factor(phenotype))) +
geom_bar(stat = "identity")
gg <- gg + scale_fill_manual(values = c(`non-severe` = "#2c7bb6", severe = "#d7191c"))
gg <- gg + facet_wrap(~stage, ncol = 1)
gg <- gg + theme_bw()
gg <- gg + theme(axis.text.x = element_text(size = 12, angle = 90), axis.text.y = element_text(size = 12,
angle = 0), axis.title = element_text(size = 14, face = "bold"), strip.text.x = element_text(size = 16,
face = "bold"))
gg <- gg + labs(x = "Sample", y = "Proportion", fill = "Stage")
gg <- gg + theme(legend.text = element_text(size = 14))
gg <- gg + theme(legend.key.size = unit(0.25, "in"))
gg <- gg + theme(legend.title = element_text(size = 16, face = "bold"))
gg <- gg + guides(fill = guide_legend(title = "Phenotype"))
gg
We now perform the Voom transformation on our count matrix. Prior to the transformation we use TMM normalisation to account for the different library sizes present in our sample. TMM was chosen as it is more robust to outliers. From the Voom variance trend it is evident that there are a number of genes that have both high variability and high expression. After looking at some of the main offenders these were identified to be influenced by staging in the parasite. Consequently it is important to account for life-cycle stage when conducting the differential expression analysis.
options(width = 150)
setwd(wd)
categories <- as.factor(substring(rownames(dge$samples), 1, 1))
dge <- calcNormFactors(dge, method = "TMM")
dge$samples$group <- categories
design <- model.matrix(~group, data = dge$samples)
v <- voom(dge, design = design, plot = TRUE)
The PCA plot below indicates that accounting for library size alone does not cope with the impact of life-cycle stages. Notably SFC21 is clearly an outlier and was identified in the mixture model as containing later stage parasites as well as gametocytes. IFM14 is also slightly separate in the PCA plot and was identified as having a proportion of Schizont stage parasite present.
setwd(wd)
plotPCA(v$E, col = colors[categories], cex = 0.8, isLog = TRUE)
Further the Relative Log Expression (RLE) plot below suggests that there is something different about SFC21 as well as highlighting IFM060 as being different.
setwd(wd)
plotVoomRLE <- function(E, colours) {
mn <- apply(E, 1, median)
rle <- data.frame(sweep(E, MARGIN = 1, STATS = mn, FUN = "-"))
boxplot(rle, col = colours, outline = FALSE, las = 2, ylim = c(-7, 7))
abline(h = 0, col = "black")
}
plotVoomRLE(v$E, colors[categories])
To investigate the impact of life-cycle stages in our analysis we fit a linear model using limma’s removeBatchEffect. Initially ring, gametocyte and schizont parameters were fit along with the disease phenotype factor. This was because for the most part the Trophozoite stages could be represented by accounting for these stages as they would be present implicitly in the model.
The PCA indicates that we have dealt with the outlying SFC21 sample as well as other less outlying samples such as IFM14 which showed a proportion of Schizont stage parasites in the mixture model. Unfortunately due to the low number of samples that have proportions of Schizont and Gametocytes estimating differential differential expression in severe disease becomes impossible. This is because there is insufficient data to estimate these stage parameters and consequently the uncertainty in the model is too high to find significant differences between severe and non-severe disease.
setwd(wd)
covs <- data.frame(v$design[, 2])
ourPlotData$phenotype <- NULL
c <- dcast(ourPlotData, sample ~ ..., value.var = "proportion")
covs <- merge(covs, c, by.x = 0, by.y = "sample")
colnames(covs) <- c("sample", "disease", colnames(c)[2:ncol(c)])
rownames(covs) <- covs$sample
covs$sample <- NULL
covs <- covs[match(colnames(v$E), rownames(covs)), ]
stopifnot(colnames(v$E) == rownames(covs))
# head(covs)
covs <- covs[, c(1, 2, 5, 6)]
# head(covs)
mod = model.matrix(as.formula(paste("~", paste(colnames(covs), collapse = " + "), sep = "")), data = covs)
norm_counts_ring <- removeBatchEffect(v$E, covariates = mod[, 3:ncol(mod)], design = mod[, 1:2])
plotPCA(norm_counts_ring, col = colors[categories], cex = 0.8, isLog = TRUE)
The RLE plot also suggests we have dealt with SFC21 however accounting for these stages does not seem to have accounted for the differences we see in the IFM060 sample. The mixture model did not identify IFM060 as being noticeably different from the other samples and consequently it is likely that there is some other unknown factor impacting on its expression.
setwd(wd)
plotVoomRLE(norm_counts_ring, col = colors[categories])
We then investigate the impact of only accounting for the Ring stage parameter in the model. This gives us more power with which to identify differential expression related to severe disease. However, from the PCA plot below it is clear that accounting for Ring stage alone is insufficient and fails to adequately deal with SFC21.
setwd(wd)
covs <- covs[, c(1, 2)]
mod = model.matrix(as.formula(paste("~", paste(colnames(covs), collapse = " + "), sep = "")), data = covs)
norm_counts_ring <- removeBatchEffect(v$E, covariates = mod[, 3:ncol(mod)], design = mod[, 1:2])
plotPCA(norm_counts_ring, col = colors[categories], cex = 0.8, isLog = TRUE)
We are however able to identify differentially expressed genes in this less parameterised model. The summary of results accounting only for the Ring stage variable are given below. This test was performed using the limma-Voom pipeline. Ideally we would be able to keep both the power in out tests and account for the remaining unwanted factors. To achieve this we make use of RUV-4 to estimate dummy variables that represent multiple unknown factors of unwanted variation.
setwd(wd)
stopifnot(colnames(dge) == rownames(mod))
v2 <- voom(dge, design = mod, plot = FALSE)
fit <- lmFit(v2, mod)
fit <- eBayes(fit, robust = TRUE)
summary(de1 <- decideTests(fit, adjust.method = "BH", p.value = 0.05))
## (Intercept) disease Ring
## -1 81 18 1265
## 0 681 4069 1734
## 1 3382 57 1145
To cope with the outlier samples such as SFC21 whilst retaining statistical power we estimate factors of unwanted variation using RUV-4.
RUV-4 requires a set of control genes which are believed to be relatively unaffected by the condition of interest, in our case this is disease severity. RUV-4 is however fairly robust to the choice of control genes.
We chose to use the 1000 genes found to have the highest p-values in the experiment of Vignali et al as controls. The experiment of Vignali et al looked at differences in expression between pregnancy associated malaria and childhood malaria. Although this is not the same association we are investigating it was considered close enough to perform adequately as a source of control genes. Further an analysis using SVA which does not require controls and rather estimates them empirically was found to produce similar results with only 5 out of 119 genes found using SVA missing from the RUV-4 approach. Further RUV-4 attempts to recover some variation that may be lost in the vanilla SVA approach when the factor of interest (severe disease) correlates with an unwanted factor. Consequently it leads to a higher number of differentially expressed genes being found. It was also thought that having an independently sourced set of control genes was preferable to empirically deriving such a set.
setwd(wd)
contol_genes_vignali <- read.table("./data/contol_genes_vignali.txt", quote = "\"")
ctrl_vignali <- geneID_mappings$current[geneID_mappings$old %in% contol_genes_vignali$V1]
length(ctrl_vignali)
## [1] 1009
empirical_controls <- ctrl_vignali[0:length(ctrl_vignali)]
empirical_controls <- rownames(v$E) %in% empirical_controls
categoriesRUV <- categories
categoriesRUV <- data.matrix(as.numeric(categoriesRUV == "S"))
ring <- data.matrix(mod[, c(1, 3)])
genes <- data.matrix(t(v$E))
ruv <- RUV4(genes, categoriesRUV, empirical_controls, 3, Z = ring)
modRUV = cbind(mod, ruv$W)
norm_counts_ring_ruv <- removeBatchEffect(v$E, covariates = modRUV[, 3:ncol(modRUV)], design = modRUV[, 1:2])
Note that although we used 1000 genes from the experiment of Vignali et al only 533 were found in our reduced expression matrix.
The PCA plot below indicates that we have dealt with most of the problems due to staging. Here we have included the Ring stage proportion from the mixture model as well as three factors of unwanted variation estimated using RUV-4.
setwd(wd)
plotPCA(norm_counts_ring_ruv, col = colors[categories], cex = 0.8, isLog = TRUE)
The RLE plot also indicates that we have succesfully dealt with most of the staging issues. Both SFC21 and IFM14 have reasonable box plots. Moreover, IFM060 has a nicer boxplot indicating that in using RUV-4, not only have we dealt with staging issues, we have also accounted for some other unknown confounding factors that would have impacted our results. The variation in each sample has also been reduced which is indicated in the reduced height of the boxplot whiskers. Finally, the results were found to be relatively robust to the removal of the outlier samples such as SFC21 and IFM14. Consequently, this approach seems to succesfully deal with both life-cycle staging issues and other unknown impacting factors.
setwd(wd)
plotVoomRLE(norm_counts_ring_ruv, colors[categories])
We now use the limma-voom pipeline, with the robust ebayes option which handles dispersion outliers. This was done to further ensure our results were less likely to be affected by outlier samples. Multiple testing correction was performed using the Benjamini-Hochberg approach.
setwd(wd)
stopifnot(colnames(dge) == rownames(modRUV))
v2 <- voom(dge, design = modRUV, plot = F)
fit <- lmFit(v2, modRUV)
fit <- eBayes(fit, robust = TRUE)
s <- summary(de2 <- decideTests(fit, adjust.method = "BH", p.value = 0.05))
s
## (Intercept) disease Ring
## -1 91 72 1393 1621 1101 478
## 0 548 4033 1450 1651 2070 3114
## 1 3505 39 1301 872 973 552
Overall 111 genes were found to be differentially expressed between severe and non-severe cases of malaria with a false dicovery rate threshold of 0.05.
A good check for validity of our model it to look at the distribution of the resulting p-values. If everything is okay we would expect a uniform distribution except near \(p=0\) where we would hope to see a spike. The barplot below indicates this is what we see which is helpful in affirming that we have done okay in removing unwanted variation without negatively impacting on the variation due to the variable of interest (diseas severity).
setwd(wd)
top_ring_ruv <- topTable(fit, coef = 2, p.value = 0.1, sort.by = "p", number = Inf, adjust.method = "BH", confint = TRUE)
hist <- data.frame(topTable(fit, coef = 2, number = Inf))
gg <- ggplot(hist, aes(x = P.Value)) + geom_histogram(binwidth = 0.01)
gg <- gg + theme_bw()
gg <- gg + theme(axis.text.x = element_text(size = 12), axis.text.y = element_text(size = 12, angle = 0), axis.title = element_text(size = 12, face = "bold"))
gg <- gg + labs(x = "P value", y = "Count")
gg
Below is a table of genes that were found to be differentially expressed, ordered by their respective p-values. The 95% confidence intervals are given with the estimated LFC as well as the BH adjusted p-values and the log-odds that the gene is differentially expressed. Here we report for interest sake all genes up to a adjusted p-value threshold of 0.1.
setwd(wd)
# Load additional gene information
GeneAnnotationPlasmoDB <- fread("./data/GeneAnnotationPlasmoDB.txt", data.table = FALSE, na.strings = "N/A")
# First lets import some additional gene information to make a nicer table
GeneAnnotationPlasmoDB <- GeneAnnotationPlasmoDB[, colnames(GeneAnnotationPlasmoDB) %in% c("[Gene ID]", "[Product Description]", "[Gene Name or Symbol]")]
top_ring_ruv <- merge(top_ring_ruv, GeneAnnotationPlasmoDB, by.x = 0, by.y = "[Gene ID]", all.x = TRUE)
top_ring_ruv <- top_ring_ruv[with(top_ring_ruv, order(adj.P.Val)), ]
# Now print the table
top_ring_ruv$P.Value <- format(top_ring_ruv$P.Value, scientific = TRUE, digits = 3)
top_ring_ruv$adj.P.Val <- format(top_ring_ruv$adj.P.Val, scientific = TRUE, digits = 3)
kable(top_ring_ruv[, c(2:4, 6:ncol(top_ring_ruv))], digits = 3)
| GeneID | Chr | Start | Strand | Length | logFC | CI.L | CI.R | AveExpr | t | P.Value | adj.P.Val | B | [Product Description] | [Gene Name or Symbol] | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9 | PF3D7_0115700 | Pf3D7_01_v3 | 607390 | - | 7504 | -1.695 | -2.671 | -0.718 | 4.472 | -5.551 | 2.64e-06 | 5.48e-03 | 4.608 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 14 | PF3D7_0202000 | Pf3D7_02_v3 | 103385 | - | 2412 | -2.232 | -3.132 | -1.331 | 14.042 | -5.745 | 2.34e-06 | 5.48e-03 | 4.793 | knob-associated histidine-rich protein | KAHRP |
| 271 | PF3D7_1255200 | Pf3D7_12_v3 | 2241271 | - | 7692 | -1.490 | -2.030 | -0.951 | 4.566 | -5.412 | 4.07e-06 | 5.63e-03 | 4.220 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 23 | PF3D7_0223500 | Pf3D7_02_v3 | 916352 | - | 7297 | -1.139 | -1.932 | -0.345 | 5.205 | -4.963 | 1.63e-05 | 8.42e-03 | 2.968 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 31 | PF3D7_0316600 | Pf3D7_03_v3 | 669302 | - | 1572 | -1.407 | -1.944 | -0.870 | 10.248 | -5.170 | 9.43e-06 | 8.42e-03 | 3.434 | formate-nitrite transporter | FNT |
| 37 | PF3D7_0400100 | Pf3D7_04_v3 | 28706 | + | 8972 | -1.593 | -1.921 | -1.266 | 4.810 | -5.026 | 1.34e-05 | 8.42e-03 | 3.139 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 156 | PF3D7_0900100 | Pf3D7_09_v3 | 20080 | + | 7806 | -1.462 | -2.010 | -0.915 | 4.673 | -5.057 | 1.22e-05 | 8.42e-03 | 3.224 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 189 | PF3D7_1023600 | Pf3D7_10_v3 | 987358 | - | 2791 | -2.045 | -3.030 | -1.060 | -0.122 | -4.980 | 1.54e-05 | 8.42e-03 | 2.487 | conserved Plasmodium protein, unknown function | NA |
| 243 | PF3D7_1223900 | Pf3D7_12_v3 | 972710 | - | 684 | -2.228 | -4.701 | 0.246 | 2.658 | -4.936 | 1.86e-05 | 8.58e-03 | 2.764 | 50S ribosomal protein L24, putative | NA |
| 142 | PF3D7_0809100 | Pf3D7_08_v3 | 459312 | + | 7256 | -1.773 | -3.635 | 0.089 | 3.226 | -4.884 | 2.08e-05 | 8.60e-03 | 2.665 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 4 | PF3D7_0106000 | Pf3D7_01_v3 | 255775 | - | 2769 | 1.185 | 0.199 | 2.172 | 1.476 | 4.664 | 4.07e-05 | 1.23e-02 | 1.920 | conserved Plasmodium protein, unknown function | NA |
| 36 | PF3D7_0324900 | Pf3D7_03_v3 | 1030822 | - | 7433 | -1.274 | -2.295 | -0.254 | 3.988 | -4.507 | 6.54e-05 | 1.23e-02 | 1.680 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 40 | PF3D7_0404600 | Pf3D7_04_v3 | 247731 | + | 12417 | -1.457 | -1.770 | -1.145 | 7.604 | -4.502 | 7.43e-05 | 1.23e-02 | 1.515 | conserved Plasmodium membrane protein, unknown function | NA |
| 45 | PF3D7_0412700 | Pf3D7_04_v3 | 561667 | - | 7676 | -1.440 | -2.188 | -0.692 | 4.841 | -4.530 | 6.09e-05 | 1.23e-02 | 1.753 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 85 | PF3D7_0600600 | Pf3D7_06_v3 | 29618 | - | 1867 | -1.681 | -2.462 | -0.901 | 3.049 | -4.700 | 3.63e-05 | 1.23e-02 | 2.155 | erythrocyte membrane protein 1 (PfEMP1), exon 2 | VAR |
| 105 | PF3D7_0632800 | Pf3D7_06_v3 | 1374797 | - | 7831 | -1.240 | -1.577 | -0.904 | 4.681 | -4.544 | 5.85e-05 | 1.23e-02 | 1.791 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 107 | PF3D7_0703100 | Pf3D7_07_v3 | 121414 | + | 543 | 0.985 | 0.194 | 1.777 | 3.582 | 4.477 | 7.15e-05 | 1.23e-02 | 1.588 | conserved Plasmodium protein, unknown function | NA |
| 120 | PF3D7_0712600 | Pf3D7_07_v3 | 566726 | - | 7583 | -1.748 | -2.417 | -1.079 | 3.429 | -4.685 | 3.80e-05 | 1.23e-02 | 2.144 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 133 | PF3D7_0800100 | Pf3D7_08_v3 | 21361 | + | 7293 | -1.596 | -2.257 | -0.936 | 4.508 | -4.513 | 6.58e-05 | 1.23e-02 | 1.687 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 136 | PF3D7_0802000 | Pf3D7_08_v3 | 146089 | + | 4194 | -1.266 | -1.753 | -0.778 | 9.188 | -4.509 | 6.90e-05 | 1.23e-02 | 1.558 | glutamate dehydrogenase, putative | GDH3 |
| 175 | PF3D7_1000100 | Pf3D7_10_v3 | 28490 | + | 7675 | -1.339 | -1.639 | -1.040 | 4.505 | -4.569 | 5.41e-05 | 1.23e-02 | 1.861 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 204 | PF3D7_1105100 | Pf3D7_11_v3 | 226065 | + | 354 | -1.063 | -1.589 | -0.536 | 9.705 | -4.600 | 5.10e-05 | 1.23e-02 | 1.799 | histone H2B | H2B |
| 216 | PF3D7_1123100 | Pf3D7_11_v3 | 909366 | + | 6959 | -0.597 | -0.908 | -0.287 | 9.103 | -4.524 | 6.21e-05 | 1.23e-02 | 1.610 | calcium-dependent protein kinase 7 | CDPK7 |
| 231 | PF3D7_1200100 | Pf3D7_12_v3 | 16973 | + | 7525 | -1.592 | -2.227 | -0.957 | 4.052 | -4.609 | 4.80e-05 | 1.23e-02 | 1.964 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 296 | PF3D7_1344800 | Pf3D7_13_v3 | 1796274 | + | 1436 | -0.768 | -1.123 | -0.413 | 6.260 | -4.560 | 5.58e-05 | 1.23e-02 | 1.803 | aspartate carbamoyltransferase | ATCase |
| 248 | PF3D7_1228800 | Pf3D7_12_v3 | 1169557 | - | 9630 | -0.657 | -1.727 | 0.414 | 6.788 | -4.415 | 8.63e-05 | 1.38e-02 | 1.365 | WD repeat-containing protein, putative | NA |
| 84 | PF3D7_0532400 | Pf3D7_05_v3 | 1312471 | + | 1684 | -1.315 | -1.774 | -0.856 | 8.118 | -4.393 | 9.77e-05 | 1.40e-02 | 1.251 | lysine-rich membrane-associated PHISTb protein | LyMP |
| 102 | PF3D7_0626200 | Pf3D7_06_v3 | 1058666 | - | 1257 | 1.643 | 0.966 | 2.319 | 2.878 | 4.387 | 9.37e-05 | 1.40e-02 | 1.321 | conserved Plasmodium protein, unknown function | NA |
| 244 | PF3D7_1224000 | Pf3D7_12_v3 | 974372 | + | 1170 | -1.670 | -3.718 | 0.378 | 2.666 | -4.378 | 9.63e-05 | 1.40e-02 | 1.298 | GTP cyclohydrolase I | GCH1 |
| 322 | PF3D7_1414200 | Pf3D7_14_v3 | 564024 | - | 1224 | 0.818 | 0.286 | 1.349 | 5.924 | 4.353 | 1.04e-04 | 1.43e-02 | 1.233 | conserved Plasmodium protein, unknown function | NA |
| 198 | PF3D7_1100100 | Pf3D7_11_v3 | 24160 | + | 7439 | -1.288 | -1.828 | -0.748 | 4.713 | -4.310 | 1.18e-04 | 1.58e-02 | 1.148 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 6 | PF3D7_0109700 | Pf3D7_01_v3 | 379149 | - | 658 | -1.423 | -2.847 | 0.001 | 4.127 | -4.269 | 1.33e-04 | 1.73e-02 | 1.040 | rRNA biogenesis protein RRP36, putative | RRP36 |
| 71 | PF3D7_0519500 | Pf3D7_05_v3 | 801450 | - | 7678 | -0.942 | -1.573 | -0.311 | 7.017 | -4.157 | 1.86e-04 | 2.09e-02 | 0.640 | carbon catabolite repressor protein 4, putative | CCR4 |
| 153 | PF3D7_0830300 | Pf3D7_08_v3 | 1290240 | - | 1167 | 1.591 | 1.299 | 1.884 | 2.023 | 4.162 | 1.83e-04 | 2.09e-02 | 0.694 | sporozoite invasion-associated protein 2 | SIAP2 |
| 168 | PF3D7_0925300 | Pf3D7_09_v3 | 1019164 | - | 1740 | 2.109 | 1.367 | 2.850 | 0.173 | 4.158 | 1.86e-04 | 2.09e-02 | 0.535 | proline–tRNA ligase, putative | aPRS |
| 193 | PF3D7_1028000 | Pf3D7_10_v3 | 1160031 | + | 3391 | -0.991 | -1.656 | -0.326 | 6.363 | -4.158 | 1.86e-04 | 2.09e-02 | 0.667 | methyltransferase, putative | NA |
| 285 | PF3D7_1316600 | Pf3D7_13_v3 | 691014 | + | 3112 | -1.262 | -1.567 | -0.958 | 6.456 | -4.192 | 1.76e-04 | 2.09e-02 | 0.726 | choline-phosphate cytidylyltransferase | CCT |
| 117 | PF3D7_0711700 | Pf3D7_07_v3 | 511950 | - | 7476 | -1.151 | -1.908 | -0.394 | 4.402 | -4.081 | 2.34e-04 | 2.50e-02 | 0.533 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 287 | PF3D7_1318300 | Pf3D7_13_v3 | 753910 | + | 5523 | -1.051 | -1.390 | -0.712 | 5.766 | -4.078 | 2.36e-04 | 2.50e-02 | 0.476 | conserved Plasmodium protein, unknown function | NA |
| 166 | PF3D7_0917800 | Pf3D7_09_v3 | 734629 | + | 1314 | 1.808 | 1.549 | 2.068 | 1.383 | 4.051 | 2.55e-04 | 2.64e-02 | 0.378 | conserved Plasmodium protein, unknown function | NA |
| 58 | PF3D7_0500100 | Pf3D7_05_v3 | 20929 | + | 7528 | -1.287 | -1.826 | -0.748 | 3.399 | -4.023 | 2.77e-04 | 2.68e-02 | 0.384 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 224 | PF3D7_1135300 | Pf3D7_11_v3 | 1381015 | - | 1230 | 1.219 | 0.684 | 1.754 | 2.281 | 4.032 | 2.70e-04 | 2.68e-02 | 0.380 | conserved Plasmodium membrane protein, unknown function | NA |
| 238 | PF3D7_1213100 | Pf3D7_12_v3 | 576417 | - | 164 | -2.305 | -2.853 | -1.757 | 2.312 | -4.036 | 2.79e-04 | 2.68e-02 | 0.339 | U1 spliceosomal RNA | NA |
| 286 | PF3D7_1316900 | Pf3D7_13_v3 | 701047 | - | 2877 | 0.669 | 0.039 | 1.299 | 7.752 | 4.007 | 2.90e-04 | 2.73e-02 | 0.185 | conserved Plasmodium protein, unknown function | NA |
| 242 | PF3D7_1223400 | Pf3D7_12_v3 | 941125 | + | 5621 | -0.766 | -2.537 | 1.005 | 11.206 | -3.995 | 3.01e-04 | 2.77e-02 | 0.101 | phospholipid-transporting ATPase, putative | NA |
| 124 | PF3D7_0713600 | Pf3D7_07_v3 | 617933 | + | 2935 | 1.165 | 0.776 | 1.554 | 3.264 | 3.969 | 3.24e-04 | 2.92e-02 | 0.245 | mitochondrial ribosomal protein S5 precursor, putative | NA |
| 41 | PF3D7_0404900 | Pf3D7_04_v3 | 267244 | - | 1137 | 1.903 | 1.310 | 2.495 | 3.340 | 3.976 | 3.31e-04 | 2.92e-02 | 0.231 | 6-cysteine protein | P41 |
| 65 | PF3D7_0509000 | Pf3D7_05_v3 | 376855 | - | 1598 | -0.641 | -1.129 | -0.152 | 5.782 | -3.938 | 3.55e-04 | 2.94e-02 | 0.094 | SNAP protein (soluble N-ethylmaleimide-sensitive factor attachment protein), putative | NA |
| 143 | PF3D7_0810800 | Pf3D7_08_v3 | 548200 | + | 2417 | -1.107 | -1.926 | -0.288 | 7.387 | -3.954 | 3.49e-04 | 2.94e-02 | 0.064 | hydroxymethyldihydropterin pyrophosphokinase-dihydropteroate synthase | PPPK-DHPS |
| 275 | PF3D7_1303000 | Pf3D7_13_v3 | 158144 | + | 635 | -1.133 | -2.435 | 0.170 | 3.355 | -3.939 | 3.54e-04 | 2.94e-02 | 0.170 | conserved Plasmodium protein, unknown function | NA |
| 139 | PF3D7_0805600 | Pf3D7_08_v3 | 312034 | + | 927 | 0.774 | 0.335 | 1.213 | 7.188 | 3.895 | 4.02e-04 | 3.22e-02 | -0.097 | PAP2-like protein, putative | NA |
| 315 | PF3D7_1400100 | Pf3D7_14_v3 | 1393 | + | 3951 | -1.321 | -1.729 | -0.913 | 4.966 | -3.901 | 4.04e-04 | 3.22e-02 | 0.021 | erythrocyte membrane protein 1 (PfEMP1), pseudogene | NA |
| 251 | PF3D7_1230500 | Pf3D7_12_v3 | 1253973 | - | 1509 | 0.909 | -0.278 | 2.097 | 4.436 | 3.879 | 4.22e-04 | 3.30e-02 | -0.002 | WD repeat-containing protein, putative | NA |
| 24 | PF3D7_0300100 | Pf3D7_03_v3 | 36965 | + | 7518 | -1.134 | -1.505 | -0.762 | 4.351 | -3.865 | 4.39e-04 | 3.32e-02 | -0.035 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 265 | PF3D7_1246600 | Pf3D7_12_v3 | 1936522 | + | 1173 | -0.852 | -1.815 | 0.111 | 5.347 | -3.864 | 4.40e-04 | 3.32e-02 | -0.078 | pre-mRNA-splicing factor CWC26, putative | BUD13 |
| 7 | PF3D7_0113000 | Pf3D7_01_v3 | 487892 | - | 2236 | -1.480 | -3.080 | 0.121 | 11.345 | -3.858 | 5.27e-04 | 3.64e-02 | -0.387 | glutamic acid-rich protein | GARP |
| 237 | PF3D7_1212800 | Pf3D7_12_v3 | 565966 | + | 966 | 1.021 | 0.421 | 1.621 | 2.457 | 3.805 | 5.22e-04 | 3.64e-02 | -0.185 | iron-sulfur subunit of succinate dehydrogenase | NA |
| 260 | PF3D7_1240900 | Pf3D7_12_v3 | 1735543 | + | 7866 | -1.406 | -2.440 | -0.371 | 4.296 | -3.816 | 5.12e-04 | 3.64e-02 | -0.165 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 267 | PF3D7_1249000 | Pf3D7_12_v3 | 2005175 | - | 2019 | 1.002 | 0.352 | 1.652 | 1.154 | 3.821 | 4.98e-04 | 3.64e-02 | -0.189 | conserved Plasmodium membrane protein, unknown function | NA |
| 347 | PF3D7_1457000 | Pf3D7_14_v3 | 2336649 | - | 2505 | -0.648 | -1.396 | 0.101 | 8.961 | -3.813 | 5.11e-04 | 3.64e-02 | -0.374 | signal peptide peptidase | SPP |
| 83 | PF3D7_0532300 | Pf3D7_05_v3 | 1308278 | + | 1663 | -1.199 | -1.939 | -0.459 | 10.800 | -3.818 | 5.46e-04 | 3.65e-02 | -0.417 | Plasmodium exported protein (PHISTb), unknown function | NA |
| 316 | PF3D7_1401400 | Pf3D7_14_v3 | 53411 | - | 324 | -0.853 | -1.218 | -0.488 | 12.466 | -3.797 | 5.42e-04 | 3.65e-02 | -0.445 | early transcribed membrane protein 14.1 | ETRAMP14 |
| 111 | PF3D7_0704600 | Pf3D7_07_v3 | 216024 | - | 13049 | -0.663 | -1.466 | 0.140 | 10.228 | -3.766 | 5.84e-04 | 3.78e-02 | -0.524 | E3 ubiquitin-protein ligase | UT |
| 205 | PF3D7_1105300 | Pf3D7_11_v3 | 231847 | - | 2392 | 1.352 | 1.003 | 1.700 | 1.696 | 3.767 | 5.82e-04 | 3.78e-02 | -0.299 | conserved Plasmodium protein, unknown function | NA |
| 211 | PF3D7_1118400 | Pf3D7_11_v3 | 699869 | - | 921 | 1.065 | 0.445 | 1.685 | 3.280 | 3.756 | 6.02e-04 | 3.84e-02 | -0.298 | haloacid dehalogenase-like hydrolase, putative | NA |
| 262 | PF3D7_1244200 | Pf3D7_12_v3 | 1852844 | - | 2838 | 1.031 | 0.729 | 1.333 | 5.481 | 3.739 | 6.32e-04 | 3.97e-02 | -0.420 | RNA polymerase II transcription factor B subunit 2, putative | TFB2 |
| 54 | PF3D7_0419800 | Pf3D7_04_v3 | 874811 | - | 711 | 0.644 | 0.109 | 1.179 | 5.924 | 3.733 | 6.43e-04 | 3.98e-02 | -0.460 | 60S ribosomal protein L7ae/L30e, putative | NA |
| 13 | PF3D7_0201900 | Pf3D7_02_v3 | 91318 | - | 7521 | -1.527 | -2.211 | -0.843 | 10.614 | -3.763 | 6.87e-04 | 4.12e-02 | -0.612 | erythrocyte membrane protein 3 | EMP3 |
| 146 | PF3D7_0821500 | Pf3D7_08_v3 | 967901 | - | 840 | 0.820 | 0.569 | 1.070 | 4.918 | 3.706 | 6.94e-04 | 4.12e-02 | -0.471 | ribosomal RNA small subunit methyltransferase NEP1, putative | NEP1 |
| 147 | PF3D7_0822200 | Pf3D7_08_v3 | 982570 | + | 5127 | 1.108 | 0.550 | 1.666 | 2.942 | 3.700 | 7.07e-04 | 4.12e-02 | -0.438 | conserved Plasmodium membrane protein, unknown function | NA |
| 149 | PF3D7_0823800 | Pf3D7_08_v3 | 1043813 | + | 1968 | -0.753 | -1.486 | -0.020 | 5.245 | -3.700 | 7.05e-04 | 4.12e-02 | -0.518 | DnaJ protein, putative | NA |
| 51 | PF3D7_0417400 | Pf3D7_04_v3 | 756294 | + | 20310 | -0.792 | -1.152 | -0.432 | 8.067 | -3.685 | 7.37e-04 | 4.24e-02 | -0.703 | conserved Plasmodium protein, unknown function | NA |
| 121 | PF3D7_0712800 | Pf3D7_07_v3 | 581386 | - | 7538 | -1.348 | -2.079 | -0.616 | 4.007 | -3.677 | 7.57e-04 | 4.24e-02 | -0.508 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 154 | PF3D7_0831700 | Pf3D7_08_v3 | 1365467 | - | 2040 | -0.982 | -1.261 | -0.702 | 13.434 | -3.690 | 7.53e-04 | 4.24e-02 | -0.742 | heat shock protein 70 | HSP70-x |
| 1 | mal_rna_11:rRNA | M76611 | 1916 | - | 108 | -1.640 | -2.203 | -1.077 | 1.870 | -3.641 | 8.35e-04 | 4.27e-02 | -0.606 | NA | NA |
| 25 | PF3D7_0302800 | Pf3D7_03_v3 | 148046 | - | 1260 | 1.163 | 0.554 | 1.772 | 5.270 | 3.630 | 8.76e-04 | 4.27e-02 | -0.700 | conserved Plasmodium protein, unknown function | NA |
| 47 | PF3D7_0413900 | Pf3D7_04_v3 | 623168 | - | 3059 | -0.742 | -1.627 | 0.143 | 6.964 | -3.656 | 8.01e-04 | 4.27e-02 | -0.736 | ubiquitin carboxyl-terminal hydrolase 13, putative | USP13 |
| 57 | PF3D7_0423800 | Pf3D7_04_v3 | 1076347 | + | 1188 | 2.290 | 1.835 | 2.746 | 2.134 | 3.628 | 9.24e-04 | 4.27e-02 | -0.670 | cysteine-rich protective antigen | CyRPA |
| 68 | PF3D7_0512000 | Pf3D7_05_v3 | 527639 | + | 1028 | -1.030 | -1.691 | -0.369 | 5.218 | -3.609 | 9.15e-04 | 4.27e-02 | -0.741 | prefoldin subunit 6, putative | NA |
| 81 | PF3D7_0529000 | Pf3D7_05_v3 | 1186787 | - | 2160 | 0.470 | -0.311 | 1.252 | 7.651 | 3.631 | 8.60e-04 | 4.27e-02 | -0.831 | conserved Plasmodium protein, unknown function | NA |
| 103 | PF3D7_0629600 | Pf3D7_06_v3 | 1218307 | + | 945 | 0.546 | 0.103 | 0.988 | 4.979 | 3.605 | 9.25e-04 | 4.27e-02 | -0.734 | conserved Plasmodium protein, unknown function | NA |
| 116 | PF3D7_0711200 | Pf3D7_07_v3 | 495238 | + | 3003 | 1.222 | 0.659 | 1.785 | 2.256 | 3.636 | 8.47e-04 | 4.27e-02 | -0.603 | conserved Plasmodium protein, unknown function | NA |
| 132 | PF3D7_0733000 | Pf3D7_07_v3 | 1417588 | - | 8647 | -1.043 | -1.615 | -0.471 | 4.926 | -3.623 | 8.79e-04 | 4.27e-02 | -0.686 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 161 | PF3D7_0909600 | Pf3D7_09_v3 | 433238 | - | 2136 | 1.511 | 1.178 | 1.843 | 0.836 | 3.642 | 8.34e-04 | 4.27e-02 | -0.635 | conserved Plasmodium protein, unknown function | NA |
| 197 | PF3D7_1041300 | Pf3D7_10_v3 | 1642401 | - | 7548 | -1.101 | -1.727 | -0.474 | 4.981 | -3.628 | 8.68e-04 | 4.27e-02 | -0.674 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 213 | PF3D7_1121100 | Pf3D7_11_v3 | 794254 | - | 5308 | -0.793 | -1.429 | -0.157 | 8.461 | -3.604 | 9.27e-04 | 4.27e-02 | -0.914 | conserved Plasmodium protein, unknown function | NA |
| 298 | PF3D7_1346200 | Pf3D7_13_v3 | 1845878 | - | 507 | 2.002 | 1.693 | 2.312 | 0.978 | 3.614 | 9.19e-04 | 4.27e-02 | -0.701 | nuclear import protein MOG1, putative | NA |
| 326 | PF3D7_1421150 | Pf3D7_14_v3 | 875173 | - | 149 | -1.649 | -2.239 | -1.059 | 1.022 | -3.645 | 8.26e-04 | 4.27e-02 | -0.626 | C/D small nucleolar RNA | NA |
| 337 | PF3D7_1444800 | Pf3D7_14_v3 | 1844041 | - | 1577 | -0.692 | -1.263 | -0.122 | 10.290 | -3.622 | 8.81e-04 | 4.27e-02 | -0.901 | fructose-bisphosphate aldolase | FBPA |
| 346 | PF3D7_1451800 | Pf3D7_14_v3 | 2123461 | + | 3139 | -0.690 | -1.189 | -0.190 | 4.615 | -3.616 | 8.96e-04 | 4.27e-02 | -0.702 | sortilin | NA |
| 207 | PF3D7_1108700 | Pf3D7_11_v3 | 373238 | - | 1623 | 0.745 | 0.222 | 1.267 | 6.854 | 3.584 | 9.81e-04 | 4.47e-02 | -0.904 | heat shock protein DnaJ homologue Pfj2 | NA |
| 95 | PF3D7_0617200 | Pf3D7_06_v3 | 717050 | + | 1868 | -1.064 | -2.315 | 0.188 | 7.853 | -3.587 | 1.03e-03 | 4.57e-02 | -0.992 | conserved Plasmodium protein, unknown function | NA |
| 299 | PF3D7_1346400 | Pf3D7_13_v3 | 1852898 | + | 17967 | -0.706 | -0.963 | -0.449 | 7.849 | -3.569 | 1.02e-03 | 4.57e-02 | -1.005 | conserved Plasmodium protein, unknown function | NA |
| 259 | PF3D7_1240600 | Pf3D7_12_v3 | 1719574 | + | 7883 | -1.224 | -1.818 | -0.629 | 3.851 | -3.554 | 1.07e-03 | 4.66e-02 | -0.814 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 303 | PF3D7_1354300 | Pf3D7_13_v3 | 2164239 | - | 3178 | -0.517 | -1.135 | 0.102 | 9.432 | -3.556 | 1.06e-03 | 4.66e-02 | -1.078 | large subunit rRNA methyltransferase, putative | NA |
| 220 | PF3D7_1126300 | Pf3D7_11_v3 | 1026976 | + | 2569 | 1.067 | 0.818 | 1.316 | 4.596 | 3.543 | 1.10e-03 | 4.76e-02 | -0.877 | DnaJ protein, putative | NA |
| 62 | PF3D7_0503100 | Pf3D7_05_v3 | 127064 | - | 1614 | -1.336 | -1.742 | -0.929 | 2.177 | -3.504 | 1.23e-03 | 4.80e-02 | -0.920 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, putative | IspE |
| 99 | PF3D7_0622700 | Pf3D7_06_v3 | 916000 | - | 1300 | 1.532 | 0.053 | 3.011 | 1.425 | 3.534 | 1.13e-03 | 4.80e-02 | -0.858 | conserved Plasmodium membrane protein, unknown function | NA |
| 128 | PF3D7_0719500 | Pf3D7_07_v3 | 854652 | - | 2003 | 0.995 | 0.204 | 1.786 | 1.461 | 3.509 | 1.21e-03 | 4.80e-02 | -0.921 | LEM3/CDC50 family protein, putative | NA |
| 170 | PF3D7_0928500 | Pf3D7_09_v3 | 1146239 | - | 959 | -1.164 | -2.209 | -0.119 | 2.608 | -3.509 | 1.21e-03 | 4.80e-02 | -0.908 | conserved Plasmodium protein, unknown function | NA |
| 177 | PF3D7_1003900 | Pf3D7_10_v3 | 177921 | + | 950 | 1.677 | 0.884 | 2.470 | 0.332 | 3.524 | 1.16e-03 | 4.80e-02 | -0.924 | conserved Plasmodium protein, unknown function | NA |
| 180 | PF3D7_1012000 | Pf3D7_10_v3 | 463493 | + | 3514 | -0.679 | -1.272 | -0.085 | 6.052 | -3.496 | 1.26e-03 | 4.80e-02 | -1.090 | E3 ubiquitin-protein ligase, putative | NA |
| 202 | PF3D7_1102800 | Pf3D7_11_v3 | 131703 | - | 285 | -0.910 | -1.825 | 0.006 | 13.470 | -3.540 | 1.15e-03 | 4.80e-02 | -1.138 | early transcribed membrane protein 11.2 | ETRAMP11.2 |
| 288 | PF3D7_1321600 | Pf3D7_13_v3 | 897716 | + | 3329 | 1.398 | 0.495 | 2.301 | 0.132 | 3.515 | 1.19e-03 | 4.80e-02 | -0.956 | phosphodiesterase gamma, putative | PDEgamma |
| 310 | PF3D7_1365600 | Pf3D7_13_v3 | 2621261 | + | 2740 | 0.733 | -0.151 | 1.617 | 4.139 | 3.495 | 1.26e-03 | 4.80e-02 | -0.967 | DNA topoisomerase VI, b subunit, putative | NA |
| 331 | PF3D7_1428100 | Pf3D7_14_v3 | 1098038 | - | 1914 | 0.966 | 0.460 | 1.473 | 3.882 | 3.497 | 1.26e-03 | 4.80e-02 | -0.959 | WW domain-binding protein 11, putative | NA |
| 341 | PF3D7_1446900 | Pf3D7_14_v3 | 1924425 | - | 2226 | 0.763 | 0.448 | 1.079 | 6.864 | 3.500 | 1.24e-03 | 4.80e-02 | -1.127 | glutaminyl-peptide cyclotransferase, putative | NA |
| 349 | PF3D7_1457900 | Pf3D7_14_v3 | 2375579 | + | 10368 | -0.756 | -1.417 | -0.094 | 5.650 | -3.528 | 1.15e-03 | 4.80e-02 | -0.978 | conserved Plasmodium protein, unknown function | NA |
| 356 | PF3D7_1470200 | Pf3D7_14_v3 | 2877586 | - | 1163 | -0.675 | -1.356 | 0.006 | 5.398 | -3.515 | 1.19e-03 | 4.80e-02 | -0.983 | conserved Plasmodium protein, unknown function | NA |
| 138 | PF3D7_0804900 | Pf3D7_08_v3 | 279711 | - | 1476 | 0.919 | -0.323 | 2.160 | 5.949 | 3.480 | 1.32e-03 | 4.96e-02 | -1.116 | GTPase-activating protein, putative | NA |
| 338 | PF3D7_1445600 | Pf3D7_14_v3 | 1871778 | + | 2604 | 0.679 | 0.247 | 1.112 | 8.272 | 3.476 | 1.33e-03 | 4.97e-02 | -1.260 | RNA-binding protein, putative | NA |
| 127 | PF3D7_0717600 | Pf3D7_07_v3 | 758720 | - | 4158 | -1.473 | -1.889 | -1.056 | 3.059 | -3.474 | 1.36e-03 | 5.02e-02 | -1.008 | conserved Plasmodium protein, unknown function | NA |
| 73 | PF3D7_0522300 | Pf3D7_05_v3 | 902613 | - | 2232 | -0.572 | -1.174 | 0.030 | 6.700 | -3.459 | 1.39e-03 | 5.09e-02 | -1.227 | S-adenosylmethionine-dependent methyltransferase, putative | NA |
| 343 | PF3D7_1449900 | Pf3D7_14_v3 | 2044007 | - | 1023 | 1.308 | 0.758 | 1.858 | 2.638 | 3.457 | 1.40e-03 | 5.09e-02 | -1.031 | conserved Plasmodium protein, unknown function | NA |
| 148 | PF3D7_0823200 | Pf3D7_08_v3 | 1022629 | - | 1218 | -0.619 | -0.974 | -0.264 | 9.617 | -3.453 | 1.42e-03 | 5.12e-02 | -1.351 | RNA-binding protein, putative | NA |
| 335 | PF3D7_1437800 | Pf3D7_14_v3 | 1530276 | - | 555 | 1.770 | 1.086 | 2.453 | 2.830 | 3.457 | 1.44e-03 | 5.16e-02 | -1.054 | trafficking protein particle complex subunit 5, putative | TRAPPC5 |
| 28 | PF3D7_0305000 | Pf3D7_03_v3 | 234058 | - | 1277 | 0.947 | 0.074 | 1.820 | 3.438 | 3.441 | 1.47e-03 | 5.16e-02 | -1.086 | elongation factor Ts | EF-Ts |
| 209 | PF3D7_1111300 | Pf3D7_11_v3 | 442959 | - | 870 | 0.841 | 0.548 | 1.135 | 2.945 | 3.438 | 1.48e-03 | 5.16e-02 | -1.079 | SNARE protein, putative | GS27 |
| 305 | PF3D7_1355700 | Pf3D7_13_v3 | 2206592 | - | 3867 | 1.237 | 0.365 | 2.109 | 7.278 | 3.465 | 1.48e-03 | 5.16e-02 | -1.296 | NLI interacting factor-like phosphatase, putative | NIF3 |
| 19 | PF3D7_0216000 | Pf3D7_02_v3 | 658636 | + | 5994 | -2.074 | -2.621 | -1.528 | 0.535 | -3.431 | 1.53e-03 | 5.29e-02 | -1.141 | DEAD/DEAH box helicase, putative | NA |
| 53 | PF3D7_0419500 | Pf3D7_04_v3 | 866501 | - | 1611 | 1.223 | 0.163 | 2.283 | 3.890 | 3.421 | 1.55e-03 | 5.30e-02 | -1.144 | conserved Plasmodium membrane protein, unknown function | NA |
| 114 | PF3D7_0708500 | Pf3D7_07_v3 | 385583 | - | 2739 | -0.737 | -1.370 | -0.105 | 6.652 | -3.415 | 1.58e-03 | 5.35e-02 | -1.337 | heat shock protein 86 family protein | NA |
| 69 | PF3D7_0513600 | Pf3D7_05_v3 | 574941 | - | 3565 | -1.045 | -1.363 | -0.726 | 5.614 | -3.413 | 1.61e-03 | 5.39e-02 | -1.283 | deoxyribodipyrimidine photo-lyase, putative | NA |
| 210 | PF3D7_1115200 | Pf3D7_11_v3 | 576773 | + | 3504 | -0.659 | -1.554 | 0.236 | 8.247 | -3.404 | 1.63e-03 | 5.39e-02 | -1.445 | histone-lysine N-methyltransferase SET7 | SET7 |
| 229 | PF3D7_1145500 | Pf3D7_11_v3 | 1807359 | + | 2772 | 1.102 | 0.252 | 1.951 | 1.564 | 3.404 | 1.63e-03 | 5.39e-02 | -1.163 | ABC transporter B family member 3, putative | ABCB3 |
| 59 | PF3D7_0501300 | Pf3D7_05_v3 | 68930 | + | 1184 | -0.925 | -1.601 | -0.250 | 12.486 | -3.399 | 1.71e-03 | 5.59e-02 | -1.517 | skeleton-binding protein 1 | SBP1 |
| 246 | PF3D7_1225600 | Pf3D7_12_v3 | 1035261 | - | 2895 | -0.478 | -2.453 | 1.498 | 8.007 | -3.386 | 1.71e-03 | 5.59e-02 | -1.485 | conserved Plasmodium protein, unknown function | NA |
| 324 | PF3D7_1417600 | Pf3D7_14_v3 | 730694 | - | 13989 | -0.568 | -1.358 | 0.222 | 8.915 | -3.382 | 1.73e-03 | 5.59e-02 | -1.523 | conserved Plasmodium protein, unknown function | NA |
| 297 | PF3D7_1345200 | Pf3D7_13_v3 | 1812220 | - | 1710 | 1.084 | 0.716 | 1.452 | 3.402 | 3.379 | 1.74e-03 | 5.59e-02 | -1.227 | rhomboid protease ROM6, putative | ROM6 |
| 29 | PF3D7_0310800 | Pf3D7_03_v3 | 464662 | + | 330 | 0.487 | -0.214 | 1.187 | 6.132 | 3.360 | 1.84e-03 | 5.68e-02 | -1.439 | conserved Plasmodium protein, unknown function | NA |
| 122 | PF3D7_0712900 | Pf3D7_07_v3 | 590326 | - | 7408 | -1.100 | -1.332 | -0.869 | 4.206 | -3.367 | 1.80e-03 | 5.68e-02 | -1.294 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 190 | PF3D7_1025000 | Pf3D7_10_v3 | 1045608 | - | 4153 | -0.570 | -0.985 | -0.156 | 8.252 | -3.366 | 1.80e-03 | 5.68e-02 | -1.534 | formin 2, putative | NA |
| 212 | PF3D7_1119200 | Pf3D7_11_v3 | 722717 | - | 573 | -1.038 | -1.443 | -0.632 | 3.783 | -3.361 | 1.83e-03 | 5.68e-02 | -1.279 | conserved protein, unknown function | NA |
| 218 | PF3D7_1124800 | Pf3D7_11_v3 | 976880 | - | 1057 | -0.568 | -1.158 | 0.023 | 6.670 | -3.363 | 1.82e-03 | 5.68e-02 | -1.469 | nuclear preribosomal assembly protein, putative | NA |
| 234 | PF3D7_1206300 | Pf3D7_12_v3 | 281020 | - | 8283 | -1.407 | -1.752 | -1.062 | 1.456 | -3.354 | 1.87e-03 | 5.73e-02 | -1.280 | conserved Plasmodium protein, unknown function | NA |
| 50 | PF3D7_0416100 | Pf3D7_04_v3 | 706529 | + | 2481 | -0.909 | -1.422 | -0.396 | 4.248 | -3.345 | 1.91e-03 | 5.78e-02 | -1.360 | glutamyl-tRNA(Gln) amidotransferase subunit A | GATA |
| 106 | PF3D7_0700100 | Pf3D7_07_v3 | 20307 | + | 7777 | -1.044 | -1.871 | -0.217 | 5.158 | -3.344 | 1.93e-03 | 5.78e-02 | -1.411 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 203 | PF3D7_1103400 | Pf3D7_11_v3 | 146427 | + | 4389 | 1.198 | -0.028 | 2.425 | 3.263 | 3.343 | 1.93e-03 | 5.78e-02 | -1.310 | FeS cluster assembly protein SufD, putative | SufD |
| 42 | PF3D7_0405400 | Pf3D7_04_v3 | 291251 | + | 9726 | -0.562 | -1.533 | 0.410 | 10.748 | -3.333 | 1.97e-03 | 5.87e-02 | -1.665 | pre-mRNA-processing-splicing factor 8, putative | PRPF8 |
| 56 | PF3D7_0421300 | Pf3D7_04_v3 | 969031 | - | 7561 | -1.056 | -1.582 | -0.531 | 4.877 | -3.320 | 2.05e-03 | 5.87e-02 | -1.447 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 247 | PF3D7_1226600 | Pf3D7_12_v3 | 1077868 | - | 909 | 1.498 | 0.096 | 2.900 | -0.283 | 3.319 | 2.05e-03 | 5.87e-02 | -1.406 | proliferating cell nuclear antigen 2 | PCNA2 |
| 255 | PF3D7_1234500 | Pf3D7_12_v3 | 1439896 | - | 1155 | 0.626 | 0.114 | 1.138 | 4.918 | 3.325 | 2.02e-03 | 5.87e-02 | -1.435 | conserved Plasmodium protein, unknown function | NA |
| 308 | PF3D7_1364000 | Pf3D7_13_v3 | 2564625 | + | 2484 | 0.987 | 0.420 | 1.554 | 3.797 | 3.328 | 2.01e-03 | 5.87e-02 | -1.369 | conserved Plasmodium protein, unknown function | NA |
| 313 | PF3D7_1372100 | Pf3D7_13_v3 | 2837053 | + | 2006 | 3.129 | 2.299 | 3.958 | 1.578 | 3.365 | 2.06e-03 | 5.87e-02 | -1.336 | Plasmodium exported protein (PHISTb), unknown function | GEXP04 |
| 339 | PF3D7_1445800 | Pf3D7_14_v3 | 1878658 | - | 3920 | 1.067 | 0.776 | 1.358 | 1.539 | 3.321 | 2.05e-03 | 5.87e-02 | -1.355 | conserved Plasmodium membrane protein, unknown function | NA |
| 280 | PF3D7_1307700 | Pf3D7_13_v3 | 344525 | + | 3708 | 0.582 | -0.368 | 1.531 | 6.383 | 3.313 | 2.09e-03 | 5.94e-02 | -1.581 | conserved Plasmodium protein, unknown function | NA |
| 109 | PF3D7_0703400 | Pf3D7_07_v3 | 129370 | - | 2463 | 1.161 | 0.838 | 1.484 | 3.395 | 3.307 | 2.12e-03 | 5.99e-02 | -1.406 | conserved Plasmodium protein, unknown function | NA |
| 183 | PF3D7_1016100 | Pf3D7_10_v3 | 643558 | - | 774 | 1.160 | 0.663 | 1.658 | 0.683 | 3.303 | 2.15e-03 | 6.01e-02 | -1.409 | conserved Plasmodium protein, unknown function | NA |
| 358 | PF3D7_1477700 | Pf3D7_14_v3 | 3202931 | + | 1087 | 2.091 | 1.317 | 2.865 | 1.770 | 3.316 | 2.17e-03 | 6.04e-02 | -1.395 | Plasmodium exported protein (PHISTa), unknown function | Pfg14-748 |
| 64 | PF3D7_0508700 | Pf3D7_05_v3 | 358261 | + | 4473 | -0.499 | -1.326 | 0.327 | 7.639 | -3.287 | 2.24e-03 | 6.05e-02 | -1.721 | pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative | PRP5 |
| 144 | PF3D7_0814100 | Pf3D7_08_v3 | 682518 | - | 1055 | 0.938 | -0.783 | 2.659 | 4.348 | 3.287 | 2.24e-03 | 6.05e-02 | -1.492 | conserved Plasmodium protein, unknown function | NA |
| 178 | PF3D7_1009300 | Pf3D7_10_v3 | 377906 | - | 1803 | 1.211 | 0.885 | 1.536 | 3.019 | 3.287 | 2.24e-03 | 6.05e-02 | -1.441 | conserved Plasmodium protein, unknown function | NA |
| 295 | PF3D7_1344200 | Pf3D7_13_v3 | 1769129 | + | 2799 | -0.564 | -1.236 | 0.108 | 9.434 | -3.286 | 2.25e-03 | 6.05e-02 | -1.777 | heat shock protein 110, putative | HSP110 |
| 330 | PF3D7_1427200 | Pf3D7_14_v3 | 1061805 | + | 975 | -1.619 | -2.155 | -1.082 | 1.505 | -3.289 | 2.25e-03 | 6.05e-02 | -1.430 | selenoprotein | Sel4 |
| 44 | PF3D7_0412400 | Pf3D7_04_v3 | 545987 | - | 7824 | -0.919 | -1.577 | -0.261 | 3.465 | -3.283 | 2.27e-03 | 6.06e-02 | -1.458 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 32 | PF3D7_0317100 | Pf3D7_03_v3 | 686282 | + | 3201 | 0.874 | 0.596 | 1.152 | 2.504 | 3.274 | 2.33e-03 | 6.06e-02 | -1.464 | 6-cysteine protein | B9 |
| 82 | PF3D7_0531000 | Pf3D7_05_v3 | 1267410 | + | 2130 | 0.713 | -0.601 | 2.027 | 4.964 | 3.276 | 2.31e-03 | 6.06e-02 | -1.559 | conserved Plasmodium protein, unknown function | NA |
| 134 | PF3D7_0800300 | Pf3D7_08_v3 | 40948 | + | 9992 | -1.073 | -1.392 | -0.753 | 5.027 | -3.282 | 2.29e-03 | 6.06e-02 | -1.553 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 289 | PF3D7_1321700 | Pf3D7_13_v3 | 902383 | + | 2784 | -0.538 | -0.896 | -0.181 | 9.122 | -3.276 | 2.31e-03 | 6.06e-02 | -1.799 | splicing factor 1 | SF1 |
| 273 | PF3D7_1302700 | Pf3D7_13_v3 | 145174 | + | 5025 | -0.474 | -1.190 | 0.241 | 8.882 | -3.270 | 2.35e-03 | 6.09e-02 | -1.808 | ATP-dependent RNA helicase DHR1, putative | NA |
| 169 | PF3D7_0926500 | Pf3D7_09_v3 | 1075915 | - | 5769 | 1.173 | 0.733 | 1.614 | 0.469 | 3.256 | 2.44e-03 | 6.26e-02 | -1.518 | conserved Plasmodium protein, unknown function | NA |
| 221 | PF3D7_1128100 | Pf3D7_11_v3 | 1094909 | - | 1023 | -0.703 | -1.004 | -0.402 | 5.252 | -3.253 | 2.46e-03 | 6.26e-02 | -1.636 | prefoldin subunit 5, putative | NA |
| 233 | PF3D7_1205700 | Pf3D7_12_v3 | 253155 | + | 969 | 1.229 | 0.775 | 1.684 | 0.855 | 3.254 | 2.45e-03 | 6.26e-02 | -1.515 | targeted glyoxalase II | tGloII |
| 17 | PF3D7_0209700 | Pf3D7_02_v3 | 400153 | - | 1707 | 0.555 | -0.119 | 1.228 | 8.789 | 3.232 | 2.61e-03 | 6.32e-02 | -1.899 | RING zinc finger protein, putative | NA |
| 22 | PF3D7_0220500 | Pf3D7_02_v3 | 823825 | - | 1040 | -0.875 | -2.077 | 0.327 | 6.458 | -3.238 | 2.57e-03 | 6.32e-02 | -1.757 | Plasmodium exported protein (hyp2), unknown function | NA |
| 87 | PF3D7_0606800 | Pf3D7_06_v3 | 288377 | - | 900 | 1.551 | 1.311 | 1.791 | 3.382 | 3.241 | 2.60e-03 | 6.32e-02 | -1.573 | probable protein, unknown function | NA |
| 130 | PF3D7_0723900 | Pf3D7_07_v3 | 1000701 | - | 4046 | -0.612 | -0.899 | -0.325 | 7.826 | -3.238 | 2.57e-03 | 6.32e-02 | -1.851 | RNA-binding protein, putative | NA |
| 187 | PF3D7_1021900 | Pf3D7_10_v3 | 905473 | - | 6873 | -0.993 | -1.349 | -0.638 | 6.736 | -3.246 | 2.57e-03 | 6.32e-02 | -1.784 | PHAX domain-containing protein, putative | NA |
| 199 | PF3D7_1100300 | Pf3D7_11_v3 | 45056 | + | 1178 | 1.993 | 1.575 | 2.412 | -0.537 | 3.236 | 2.60e-03 | 6.32e-02 | -1.598 | rifin | RIF |
| 241 | PF3D7_1217000 | Pf3D7_12_v3 | 674349 | - | 429 | 1.119 | 0.313 | 1.924 | 1.672 | 3.236 | 2.58e-03 | 6.32e-02 | -1.546 | conserved Plasmodium protein, unknown function | NA |
| 317 | PF3D7_1401600 | Pf3D7_14_v3 | 61364 | - | 1625 | -0.760 | -1.042 | -0.478 | 8.852 | -3.236 | 2.61e-03 | 6.32e-02 | -1.901 | Plasmodium exported protein (PHISTb), unknown function | NA |
| 70 | PF3D7_0518300 | Pf3D7_05_v3 | 759831 | - | 1168 | -0.484 | -0.912 | -0.056 | 6.571 | -3.226 | 2.65e-03 | 6.33e-02 | -1.809 | proteasome subunit beta type-1, putative | NA |
| 72 | PF3D7_0521000 | Pf3D7_05_v3 | 859373 | - | 1691 | -0.687 | -1.390 | 0.017 | 5.971 | -3.225 | 2.66e-03 | 6.33e-02 | -1.762 | conserved Plasmodium protein, unknown function | NA |
| 98 | PF3D7_0621500 | Pf3D7_06_v3 | 881963 | + | 1032 | 1.065 | 0.072 | 2.058 | 1.161 | 3.225 | 2.65e-03 | 6.33e-02 | -1.574 | ribonuclease P/MRP protein subunit RPP1, putative | RPP1 |
| 174 | PF3D7_0936800 | Pf3D7_09_v3 | 1458392 | + | 1471 | -0.876 | -1.190 | -0.562 | 10.878 | -3.220 | 2.77e-03 | 6.48e-02 | -1.957 | Plasmodium exported protein (PHISTc), unknown function | NA |
| 181 | PF3D7_1013000 | Pf3D7_10_v3 | 500210 | + | 2012 | 1.140 | 0.529 | 1.751 | 2.844 | 3.208 | 2.78e-03 | 6.48e-02 | -1.624 | zinc finger protein, putative | NA |
| 184 | PF3D7_1016200 | Pf3D7_10_v3 | 646054 | + | 1683 | 1.055 | 0.321 | 1.789 | 4.570 | 3.206 | 2.80e-03 | 6.48e-02 | -1.710 | Rab3 GTPase-activating protein non-catalytic subunit, putative | NA |
| 227 | PF3D7_1140800 | Pf3D7_11_v3 | 1633920 | + | 2412 | 0.505 | -0.045 | 1.055 | 6.676 | 3.212 | 2.75e-03 | 6.48e-02 | -1.849 | conserved Plasmodium protein, unknown function | NA |
| 230 | PF3D7_1149500 | Pf3D7_11_v3 | 1991359 | - | 2660 | -0.653 | -1.498 | 0.192 | 8.007 | -3.204 | 2.81e-03 | 6.48e-02 | -1.927 | ring-infected erythrocyte surface antigen 2, pseudogene | RESA2 |
| 319 | PF3D7_1410500 | Pf3D7_14_v3 | 423751 | - | 500 | 1.042 | 0.705 | 1.378 | 1.400 | 3.205 | 2.80e-03 | 6.48e-02 | -1.618 | conserved Plasmodium protein, unknown function | NA |
| 104 | PF3D7_0631600 | Pf3D7_06_v3 | 1323294 | + | 1142 | -1.234 | -1.641 | -0.828 | 2.559 | -3.201 | 2.83e-03 | 6.49e-02 | -1.631 | exported protein family 4 | EPF4 |
| 323 | PF3D7_1414500 | Pf3D7_14_v3 | 578369 | - | 9161 | -0.636 | -0.920 | -0.351 | 7.984 | -3.197 | 2.86e-03 | 6.52e-02 | -1.965 | atypical protein kinase, ABC-1 family, putative | ABCk2 |
| 12 | PF3D7_0201800 | Pf3D7_02_v3 | 86832 | - | 1960 | -0.527 | -0.803 | -0.252 | 9.437 | -3.178 | 3.02e-03 | 6.61e-02 | -2.046 | knob associated heat shock protein 40 | KAHsp40 |
| 33 | PF3D7_0317500 | Pf3D7_03_v3 | 716523 | - | 5309 | 0.587 | -0.080 | 1.253 | 7.115 | 3.180 | 3.00e-03 | 6.61e-02 | -1.961 | kinesin-5 | EG5 |
| 52 | PF3D7_0418300 | Pf3D7_04_v3 | 819362 | - | 2979 | 0.610 | 0.114 | 1.106 | 10.470 | 3.186 | 2.95e-03 | 6.61e-02 | -2.036 | conserved Plasmodium protein, unknown function | NA |
| 67 | PF3D7_0511000 | Pf3D7_05_v3 | 467585 | - | 516 | -0.538 | -0.738 | -0.337 | 8.120 | -3.185 | 2.96e-03 | 6.61e-02 | -1.988 | translationally-controlled tumor protein homolog | TCTP |
| 263 | PF3D7_1244300 | Pf3D7_12_v3 | 1857849 | + | 242 | -1.945 | -2.961 | -0.930 | 2.568 | -3.199 | 2.97e-03 | 6.61e-02 | -1.662 | ACEA small nucleolar RNA U3 | NA |
| 277 | PF3D7_1304300 | Pf3D7_13_v3 | 231083 | + | 642 | 1.477 | 0.660 | 2.294 | 0.552 | 3.180 | 3.00e-03 | 6.61e-02 | -1.683 | conserved Plasmodium protein, unknown function | NA |
| 278 | PF3D7_1305400 | Pf3D7_13_v3 | 268785 | - | 1953 | 0.561 | 0.218 | 0.904 | 5.309 | 3.182 | 2.98e-03 | 6.61e-02 | -1.821 | AAR2 protein, putative | NA |
| 34 | PF3D7_0319600 | Pf3D7_03_v3 | 817913 | + | 783 | -0.442 | -0.957 | 0.073 | 8.336 | -3.170 | 3.08e-03 | 6.72e-02 | -2.045 | elongation factor 1 (EF-1), putative | NA |
| 195 | PF3D7_1035800 | Pf3D7_10_v3 | 1420533 | + | 2139 | -1.293 | -1.677 | -0.909 | 9.469 | -3.201 | 3.10e-03 | 6.72e-02 | -2.007 | probable protein, unknown function | M712 |
| 283 | PF3D7_1309400 | Pf3D7_13_v3 | 431892 | + | 3984 | -0.750 | -1.414 | -0.086 | 5.757 | -3.166 | 3.12e-03 | 6.72e-02 | -1.885 | HORMA domain protein, putative | NA |
| 173 | PF3D7_0935900 | Pf3D7_09_v3 | 1420483 | - | 2325 | -0.762 | -1.083 | -0.440 | 13.744 | -3.169 | 3.13e-03 | 6.73e-02 | -2.072 | ring-exported protein 1 | REX1 |
| 152 | PF3D7_0829100 | Pf3D7_08_v3 | 1252349 | + | 1448 | -0.521 | -1.286 | 0.244 | 7.060 | -3.160 | 3.16e-03 | 6.75e-02 | -2.006 | conserved protein, unknown function | NA |
| 222 | PF3D7_1133000 | Pf3D7_11_v3 | 1275574 | + | 90 | 1.310 | 0.942 | 1.678 | 0.955 | 3.158 | 3.18e-03 | 6.77e-02 | -1.727 | conserved Plasmodium protein, unknown function | NA |
| 16 | PF3D7_0205400 | Pf3D7_02_v3 | 223478 | + | 1374 | 0.446 | 0.105 | 0.787 | 6.179 | 3.149 | 3.26e-03 | 6.80e-02 | -1.969 | PCI domain-containing protein, putative | NA |
| 55 | PF3D7_0420000 | Pf3D7_04_v3 | 894612 | - | 10113 | -0.524 | -1.375 | 0.327 | 9.311 | -3.146 | 3.29e-03 | 6.80e-02 | -2.125 | zinc finger protein, putative | NA |
| 182 | PF3D7_1015800 | Pf3D7_10_v3 | 633682 | + | 1605 | 1.197 | 0.525 | 1.870 | 0.318 | 3.151 | 3.24e-03 | 6.80e-02 | -1.749 | ribonucleoside-diphosphate reductase small chain, putative | NA |
| 258 | PF3D7_1240400 | Pf3D7_12_v3 | 1704512 | + | 7979 | -0.936 | -1.157 | -0.715 | 4.827 | -3.148 | 3.27e-03 | 6.80e-02 | -1.857 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 355 | PF3D7_1468100 | Pf3D7_14_v3 | 2786308 | - | 8016 | -0.558 | -0.954 | -0.161 | 10.206 | -3.146 | 3.28e-03 | 6.80e-02 | -2.133 | conserved Plasmodium protein, unknown function | NA |
| 357 | PF3D7_1472300 | Pf3D7_14_v3 | 2954108 | + | 3001 | 1.050 | 0.167 | 1.932 | 4.451 | 3.145 | 3.30e-03 | 6.80e-02 | -1.843 | conserved Plasmodium membrane protein, unknown function | NA |
| 66 | PF3D7_0509800 | Pf3D7_05_v3 | 410268 | + | 5041 | -0.385 | -0.757 | -0.013 | 8.254 | -3.141 | 3.33e-03 | 6.80e-02 | -2.114 | phosphatidylinositol 4-kinase | PI4K |
| 232 | PF3D7_1200200 | Pf3D7_12_v3 | 26321 | - | 1367 | -1.845 | -2.273 | -1.417 | -0.252 | -3.141 | 3.33e-03 | 6.80e-02 | -1.797 | rifin | RIF |
| 226 | PF3D7_1140200 | Pf3D7_11_v3 | 1601257 | - | 1822 | -1.160 | -1.579 | -0.742 | 3.820 | -3.140 | 3.35e-03 | 6.81e-02 | -1.826 | conserved Plasmodium protein, unknown function | NA |
| 348 | PF3D7_1457100 | Pf3D7_14_v3 | 2340784 | + | 2244 | -0.895 | -1.549 | -0.240 | 6.629 | -3.139 | 3.39e-03 | 6.85e-02 | -2.013 | conserved Plasmodium protein, unknown function | NA |
| 200 | PF3D7_1102600 | Pf3D7_11_v3 | 123818 | - | 919 | 1.461 | 0.883 | 2.039 | 2.317 | 3.132 | 3.43e-03 | 6.91e-02 | -1.791 | Plasmodium exported protein, unknown function | GEXP14 |
| 112 | PF3D7_0705600 | Pf3D7_07_v3 | 281035 | - | 3399 | 0.833 | 0.363 | 1.303 | 3.988 | 3.125 | 3.48e-03 | 6.96e-02 | -1.857 | RNA helicase, putative | NA |
| 352 | PF3D7_1460500 | Pf3D7_14_v3 | 2466091 | + | 4899 | 1.016 | 0.429 | 1.604 | 2.431 | 3.123 | 3.49e-03 | 6.96e-02 | -1.807 | conserved Plasmodium protein, unknown function | NA |
| 3 | PF3D7_0101000 | Pf3D7_01_v3 | 65817 | - | 1173 | -2.246 | -2.928 | -1.565 | -1.073 | -3.119 | 3.57e-03 | 7.06e-02 | -1.882 | rifin | RIF |
| 90 | PF3D7_0609700 | Pf3D7_06_v3 | 413652 | + | 6130 | -0.563 | -1.557 | 0.430 | 9.552 | -3.111 | 3.61e-03 | 7.06e-02 | -2.211 | conserved Plasmodium protein, unknown function | NA |
| 186 | PF3D7_1019300 | Pf3D7_10_v3 | 774929 | - | 5559 | 0.842 | 0.580 | 1.103 | 4.369 | 3.114 | 3.58e-03 | 7.06e-02 | -1.903 | zinc finger protein, putative | NA |
| 272 | PF3D7_1301400 | Pf3D7_13_v3 | 82718 | + | 1301 | -0.891 | -1.162 | -0.619 | 8.053 | -3.118 | 3.61e-03 | 7.06e-02 | -2.129 | Plasmodium exported protein (hyp12), unknown function | HYP12 |
| 165 | PF3D7_0915500 | Pf3D7_09_v3 | 657418 | + | 1995 | 1.320 | 0.789 | 1.851 | 0.044 | 3.109 | 3.63e-03 | 7.07e-02 | -1.847 | conserved Plasmodium protein, unknown function | NA |
| 123 | PF3D7_0713500 | Pf3D7_07_v3 | 614385 | + | 2865 | 0.925 | 0.534 | 1.316 | 4.314 | 3.100 | 3.72e-03 | 7.07e-02 | -1.938 | conserved Plasmodium protein, unknown function | NA |
| 141 | PF3D7_0808700 | Pf3D7_08_v3 | 440408 | + | 7655 | -0.981 | -1.345 | -0.618 | 4.547 | -3.102 | 3.69e-03 | 7.07e-02 | -1.952 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 145 | PF3D7_0817100 | Pf3D7_08_v3 | 774299 | + | 2493 | 1.043 | 0.215 | 1.870 | 0.070 | 3.101 | 3.70e-03 | 7.07e-02 | -1.864 | tRNA modification GTPase, putative | NA |
| 162 | PF3D7_0913100 | Pf3D7_09_v3 | 571031 | - | 2319 | 1.169 | 0.432 | 1.905 | -0.164 | 3.102 | 3.69e-03 | 7.07e-02 | -1.865 | conserved Plasmodium protein, unknown function | NA |
| 345 | PF3D7_1451100 | Pf3D7_14_v3 | 2090902 | + | 2499 | -0.648 | -1.295 | -0.001 | 12.559 | -3.105 | 3.67e-03 | 7.07e-02 | -2.231 | elongation factor 2 | eEF2 |
| 281 | PF3D7_1308300 | Pf3D7_13_v3 | 372260 | + | 387 | 0.444 | -0.083 | 0.971 | 7.958 | 3.092 | 3.80e-03 | 7.19e-02 | -2.222 | 40S ribosomal protein S27 | RPS27 |
| 27 | PF3D7_0304900 | Pf3D7_03_v3 | 231793 | - | 513 | 0.801 | 0.116 | 1.486 | 5.085 | 3.080 | 3.92e-03 | 7.22e-02 | -2.035 | conserved Plasmodium protein, unknown function | NA |
| 76 | PF3D7_0524800 | Pf3D7_05_v3 | 1021408 | - | 2900 | 0.882 | 0.028 | 1.736 | 3.247 | 3.087 | 3.84e-03 | 7.22e-02 | -1.915 | ubiquitin fusion degradation protein 1, putative | UFD1 |
| 225 | PF3D7_1137300 | Pf3D7_11_v3 | 1466197 | - | 2070 | 0.450 | -0.267 | 1.166 | 7.350 | 3.080 | 3.92e-03 | 7.22e-02 | -2.218 | CLPTM1 domain-containing protein, putative | NA |
| 252 | PF3D7_1231600 | Pf3D7_12_v3 | 1301098 | - | 3507 | -0.706 | -1.747 | 0.336 | 6.288 | -3.084 | 3.88e-03 | 7.22e-02 | -2.140 | pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2, putative | PRP2 |
| 282 | PF3D7_1309100 | Pf3D7_13_v3 | 418820 | + | 1302 | -0.722 | -1.280 | -0.165 | 8.832 | -3.088 | 3.87e-03 | 7.22e-02 | -2.267 | 60S ribosomal protein L24, putative | NA |
| 291 | PF3D7_1324200 | Pf3D7_13_v3 | 1000100 | - | 1783 | -0.797 | -1.141 | -0.454 | 7.145 | -3.086 | 3.89e-03 | 7.22e-02 | -2.192 | micro-fibrillar-associated protein, putative | NA |
| 119 | PF3D7_0712300 | Pf3D7_07_v3 | 542906 | - | 7615 | -1.223 | -2.264 | -0.181 | 3.752 | -3.079 | 3.97e-03 | 7.25e-02 | -1.970 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 307 | PF3D7_1362300 | Pf3D7_13_v3 | 2493143 | + | 570 | 0.782 | -0.312 | 1.876 | 3.668 | 3.075 | 3.97e-03 | 7.25e-02 | -1.960 | conserved protein, unknown function | NA |
| 240 | PF3D7_1215900 | Pf3D7_12_v3 | 641552 | + | 1968 | 0.743 | 0.298 | 1.187 | 4.806 | 3.068 | 4.04e-03 | 7.35e-02 | -2.053 | serpentine receptor, putative | SR10 |
| 20 | PF3D7_0216400 | Pf3D7_02_v3 | 675431 | + | 2169 | 0.789 | 0.122 | 1.457 | 0.530 | 3.064 | 4.09e-03 | 7.37e-02 | -1.935 | vacuolar protein sorting-associated protein 45, putative | VPS45 |
| 172 | PF3D7_0932900 | Pf3D7_09_v3 | 1309467 | - | 477 | 0.939 | 0.530 | 1.349 | 2.103 | 3.065 | 4.08e-03 | 7.37e-02 | -1.934 | conserved Plasmodium protein, unknown function | NA |
| 292 | PF3D7_1326700 | Pf3D7_13_v3 | 1125280 | + | 1629 | 1.336 | 0.904 | 1.768 | 3.634 | 3.063 | 4.16e-03 | 7.46e-02 | -1.997 | conserved Apicomplexan protein, unknown function | NA |
| 160 | PF3D7_0907900 | Pf3D7_09_v3 | 367865 | - | 925 | -1.480 | -2.225 | -0.735 | 3.656 | -3.067 | 4.19e-03 | 7.48e-02 | -2.006 | peptide deformylase | |
| 333 | PF3D7_1434300 | Pf3D7_14_v3 | 1372903 | + | 1695 | -0.408 | -1.424 | 0.608 | 8.746 | -3.050 | 4.25e-03 | 7.55e-02 | -2.352 | Hsp70/Hsp90 organizing protein | HOP |
| 353 | PF3D7_1462800 | Pf3D7_14_v3 | 2559098 | + | 1250 | -0.693 | -1.932 | 0.546 | 13.081 | -3.050 | 4.27e-03 | 7.56e-02 | -2.364 | glyceraldehyde-3-phosphate dehydrogenase | GAPDH |
| 5 | PF3D7_0108500 | Pf3D7_01_v3 | 349170 | + | 540 | -0.875 | -2.335 | 0.586 | 10.163 | -3.051 | 4.39e-03 | 7.58e-02 | -2.381 | conserved Plasmodium protein, unknown function | NA |
| 10 | PF3D7_0200100 | Pf3D7_02_v3 | 25232 | + | 5937 | -1.299 | -2.059 | -0.540 | 3.963 | -3.049 | 4.33e-03 | 7.58e-02 | -2.044 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 214 | PF3D7_1122300 | Pf3D7_11_v3 | 846929 | + | 1086 | 0.944 | 0.421 | 1.466 | 3.809 | 3.043 | 4.32e-03 | 7.58e-02 | -2.047 | conserved Plasmodium protein, unknown function | NA |
| 215 | PF3D7_1122900 | Pf3D7_11_v3 | 878969 | + | 16305 | -1.086 | -1.508 | -0.664 | 1.411 | -3.039 | 4.37e-03 | 7.58e-02 | -1.988 | dynein heavy chain, putative | NA |
| 254 | PF3D7_1233100 | Pf3D7_12_v3 | 1359169 | + | 408 | -0.794 | -1.469 | -0.119 | 4.068 | -3.041 | 4.35e-03 | 7.58e-02 | -2.051 | conserved protein, unknown function | NA |
| 270 | PF3D7_1253100 | Pf3D7_12_v3 | 2171342 | + | 1008 | 0.614 | 0.151 | 1.077 | 6.992 | 3.039 | 4.37e-03 | 7.58e-02 | -2.295 | Plasmodium exported protein (PHISTa), unknown function | NA |
| 115 | PF3D7_0709600 | Pf3D7_07_v3 | 429857 | - | 3902 | -0.489 | -0.848 | -0.129 | 7.337 | -3.035 | 4.41e-03 | 7.59e-02 | -2.325 | ribonucleases P/MRP protein subunit POP1, putative | POP1 |
| 223 | PF3D7_1133700 | Pf3D7_11_v3 | 1302173 | + | 3815 | -0.680 | -1.110 | -0.249 | 10.033 | -3.034 | 4.46e-03 | 7.60e-02 | -2.412 | FHA domain-containing protein, putative | NA |
| 264 | PF3D7_1244800 | Pf3D7_12_v3 | 1873194 | - | 2094 | -0.452 | -2.303 | 1.399 | 7.567 | -3.030 | 4.48e-03 | 7.60e-02 | -2.356 | cytoplasmic translation machinery associated protein, putative | NA |
| 269 | PF3D7_1251400 | Pf3D7_12_v3 | 2097436 | - | 1410 | 1.035 | 0.691 | 1.379 | 1.657 | 3.031 | 4.46e-03 | 7.60e-02 | -2.004 | conserved Plasmodium protein, unknown function | NA |
| 48 | PF3D7_0415300 | Pf3D7_04_v3 | 681810 | + | 4159 | -0.547 | -0.925 | -0.169 | 8.627 | -3.020 | 4.59e-03 | 7.68e-02 | -2.419 | cdc2-related protein kinase 3 | CRK3 |
| 108 | PF3D7_0703200 | Pf3D7_07_v3 | 122513 | - | 4623 | -0.955 | -1.527 | -0.383 | 4.508 | -3.017 | 4.63e-03 | 7.68e-02 | -2.153 | conserved Plasmodium protein, unknown function | NA |
| 118 | PF3D7_0712000 | Pf3D7_07_v3 | 527338 | - | 7794 | -1.572 | -1.966 | -1.178 | 3.236 | -3.029 | 4.61e-03 | 7.68e-02 | -2.059 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 155 | PF3D7_0833500 | Pf3D7_08_v3 | 1435794 | - | 7656 | -0.978 | -1.408 | -0.547 | 4.340 | -3.022 | 4.57e-03 | 7.68e-02 | -2.123 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 188 | PF3D7_1023000 | Pf3D7_10_v3 | 961066 | - | 1242 | 0.838 | 0.065 | 1.610 | 1.337 | 3.016 | 4.65e-03 | 7.68e-02 | -2.035 | conserved Plasmodium membrane protein, unknown function | NA |
| 300 | PF3D7_1347500 | Pf3D7_13_v3 | 1897983 | - | 1380 | -0.472 | -0.748 | -0.196 | 12.054 | -3.015 | 4.65e-03 | 7.68e-02 | -2.454 | DNA/RNA-binding protein Alba 4 | ALBA4 |
| 318 | PF3D7_1404900 | Pf3D7_14_v3 | 170000 | + | 894 | 0.405 | -0.046 | 0.855 | 8.338 | 3.020 | 4.59e-03 | 7.68e-02 | -2.410 | conserved Plasmodium protein, unknown function | NA |
| 92 | PF3D7_0613600 | Pf3D7_06_v3 | 554457 | + | 3772 | 1.236 | 0.284 | 2.188 | 0.053 | 3.009 | 4.73e-03 | 7.71e-02 | -2.056 | conserved Plasmodium protein, unknown function | NA |
| 125 | PF3D7_0716000 | Pf3D7_07_v3 | 703207 | + | 3378 | -0.490 | -0.849 | -0.130 | 8.568 | -3.008 | 4.74e-03 | 7.71e-02 | -2.448 | RNA-binding protein, putative | NA |
| 167 | PF3D7_0923100 | Pf3D7_09_v3 | 941830 | - | 669 | 1.113 | 0.506 | 1.720 | 1.302 | 3.009 | 4.73e-03 | 7.71e-02 | -2.049 | OTU domain-containing protein, putative | NA |
| 239 | PF3D7_1214600 | Pf3D7_12_v3 | 613561 | - | 1014 | -0.563 | -1.043 | -0.084 | 4.766 | -3.012 | 4.70e-03 | 7.71e-02 | -2.178 | adrenodoxin-type ferredoxin, putative | NA |
| 100 | PF3D7_0625400 | Pf3D7_06_v3 | 1032536 | - | 1239 | 0.554 | -0.780 | 1.888 | 7.778 | 3.005 | 4.77e-03 | 7.73e-02 | -2.416 | conserved Plasmodium protein, unknown function | NA |
| 79 | PF3D7_0528100 | Pf3D7_05_v3 | 1157840 | - | 3714 | -0.377 | -1.096 | 0.342 | 9.370 | -2.997 | 4.88e-03 | 7.81e-02 | -2.490 | AP-1 complex subunit beta, putative | NA |
| 191 | PF3D7_1025500 | Pf3D7_10_v3 | 1067652 | - | 19341 | -1.108 | -1.901 | -0.316 | 0.450 | -2.998 | 4.86e-03 | 7.81e-02 | -2.074 | conserved Plasmodium protein, unknown function | NA |
| 194 | PF3D7_1030100 | Pf3D7_10_v3 | 1224519 | - | 4574 | -0.406 | -1.677 | 0.865 | 8.759 | -2.997 | 4.88e-03 | 7.81e-02 | -2.478 | pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative | PRP22 |
| 77 | PF3D7_0527500 | Pf3D7_05_v3 | 1143618 | + | 1742 | -0.398 | -1.848 | 1.052 | 9.586 | -2.992 | 4.94e-03 | 7.83e-02 | -2.505 | Hsc70-interacting protein | HIP |
| 131 | PF3D7_0724000 | Pf3D7_07_v3 | 1006335 | + | 5811 | 0.875 | 0.418 | 1.332 | 2.241 | 2.994 | 4.92e-03 | 7.83e-02 | -2.094 | Rab GTPase activator and protein kinase, putative | NA |
| 268 | PF3D7_1250800 | Pf3D7_12_v3 | 2077718 | + | 5170 | -0.475 | -0.773 | -0.177 | 6.852 | -2.991 | 4.95e-03 | 7.83e-02 | -2.402 | DNA repair protein rhp16, putative | NA |
| 340 | PF3D7_1446300 | Pf3D7_14_v3 | 1898351 | + | 3576 | 1.129 | 0.535 | 1.724 | 4.066 | 2.990 | 5.01e-03 | 7.90e-02 | -2.191 | conserved Plasmodium membrane protein, unknown function | NA |
| 179 | PF3D7_1011800 | Pf3D7_10_v3 | 455398 | + | 3420 | -0.579 | -1.305 | 0.146 | 10.624 | -2.984 | 5.04e-03 | 7.92e-02 | -2.531 | PRE-binding protein | PREBP |
| 274 | PF3D7_1302900 | Pf3D7_13_v3 | 154992 | + | 2403 | 1.025 | 0.147 | 1.903 | 3.537 | 2.980 | 5.10e-03 | 7.98e-02 | -2.176 | conserved Plasmodium protein, unknown function | NA |
| 235 | PF3D7_1208600 | Pf3D7_12_v3 | 402300 | + | 228 | -0.700 | -1.229 | -0.171 | 3.757 | -2.977 | 5.15e-03 | 8.00e-02 | -2.206 | mitochondrial import inner membrane translocase subunit TIM10, putative | TIM10 |
| 284 | PF3D7_1309600 | Pf3D7_13_v3 | 438510 | + | 867 | 0.727 | 0.325 | 1.129 | 4.309 | 2.976 | 5.15e-03 | 8.00e-02 | -2.227 | ribosomal RNA methyltransferase, putative | NA |
| 11 | PF3D7_0201600 | Pf3D7_02_v3 | 77251 | - | 1558 | -0.649 | -1.469 | 0.172 | 9.150 | -2.971 | 5.23e-03 | 8.01e-02 | -2.534 | PHISTb domain-containing RESA-like protein 1 | RLP1 |
| 18 | PF3D7_0211800 | Pf3D7_02_v3 | 475242 | + | 1833 | -0.643 | -1.218 | -0.068 | 9.283 | -2.961 | 5.37e-03 | 8.01e-02 | -2.576 | asparagine–tRNA ligase | AsnRS |
| 97 | PF3D7_0621300 | Pf3D7_06_v3 | 873809 | + | 2382 | 0.443 | -0.422 | 1.307 | 7.592 | 2.960 | 5.37e-03 | 8.01e-02 | -2.519 | mRNA binding Pumilio-homology domain protein, putative | NA |
| 129 | PF3D7_0719900 | Pf3D7_07_v3 | 865927 | + | 10206 | -0.417 | -1.081 | 0.248 | 7.724 | -2.959 | 5.39e-03 | 8.01e-02 | -2.534 | conserved Plasmodium membrane protein, unknown function | NA |
| 135 | PF3D7_0801700 | Pf3D7_08_v3 | 112299 | + | 5579 | -0.589 | -0.932 | -0.246 | 6.129 | -2.966 | 5.29e-03 | 8.01e-02 | -2.408 | sentrin-specific protease 2, putative | SENP2 |
| 137 | PF3D7_0804700 | Pf3D7_08_v3 | 271417 | - | 5997 | -0.573 | -1.463 | 0.317 | 5.755 | -2.962 | 5.34e-03 | 8.01e-02 | -2.382 | conserved Plasmodium protein, unknown function | NA |
| 159 | PF3D7_0907700 | Pf3D7_09_v3 | 364069 | - | 840 | 0.415 | 0.186 | 0.645 | 7.929 | 2.970 | 5.23e-03 | 8.01e-02 | -2.513 | subunit of proteaseome activator complex, putative | PA28 |
| 217 | PF3D7_1124100 | Pf3D7_11_v3 | 951382 | - | 4962 | -0.411 | -0.946 | 0.123 | 8.014 | -2.963 | 5.34e-03 | 8.01e-02 | -2.538 | beige/BEACH domain protein, putative | NA |
| 256 | PF3D7_1235300 | Pf3D7_12_v3 | 1470713 | + | 4989 | -0.568 | -1.359 | 0.222 | 9.292 | -2.966 | 5.29e-03 | 8.01e-02 | -2.560 | CCR4-NOT transcription complex subunit 4, putative | NOT4 |
| 301 | PF3D7_1350100 | Pf3D7_13_v3 | 2005962 | - | 1989 | -0.430 | -1.427 | 0.567 | 9.206 | -2.962 | 5.34e-03 | 8.01e-02 | -2.572 | lysine–tRNA ligase | KRS1 |
| 312 | PF3D7_1366500 | Pf3D7_13_v3 | 2661573 | + | 450 | 1.090 | 0.675 | 1.506 | 0.730 | 2.968 | 5.26e-03 | 8.01e-02 | -2.136 | nucleoside diphosphate kinase | NDK |
| 350 | PF3D7_1458000 | Pf3D7_14_v3 | 2387786 | + | 1710 | 0.339 | -0.118 | 0.796 | 8.196 | 2.974 | 5.19e-03 | 8.01e-02 | -2.513 | cysteine proteinase falcipain 1 | FP1 |
| 61 | PF3D7_0502500 | Pf3D7_05_v3 | 114149 | + | 1785 | 1.611 | 0.861 | 2.360 | 0.201 | 2.957 | 5.42e-03 | 8.02e-02 | -2.162 | conserved Plasmodium protein, unknown function | NA |
| 354 | PF3D7_1466300 | Pf3D7_14_v3 | 2709418 | + | 3775 | -0.392 | -1.138 | 0.353 | 9.366 | -2.954 | 5.46e-03 | 8.05e-02 | -2.594 | 26S proteasome regulatory subunit RPN2, putative | RPN2 |
| 151 | PF3D7_0826900 | Pf3D7_08_v3 | 1164655 | + | 2551 | 0.987 | 0.185 | 1.788 | 3.078 | 2.949 | 5.54e-03 | 8.14e-02 | -2.215 | conserved Plasmodium protein, unknown function | NA |
| 80 | PF3D7_0528800 | Pf3D7_05_v3 | 1180425 | - | 1614 | 0.476 | -0.329 | 1.281 | 6.073 | 2.942 | 5.64e-03 | 8.23e-02 | -2.454 | nucleolar preribosomal GTPase, putative | NA |
| 257 | PF3D7_1239800 | Pf3D7_12_v3 | 1660451 | + | 17304 | -1.106 | -1.531 | -0.682 | 3.686 | -2.944 | 5.62e-03 | 8.23e-02 | -2.275 | conserved Plasmodium protein, unknown function | NA |
| 39 | PF3D7_0404300 | Pf3D7_04_v3 | 234014 | - | 3000 | -0.853 | -1.708 | 0.001 | 7.533 | -2.947 | 5.68e-03 | 8.23e-02 | -2.559 | conserved Plasmodium protein, unknown function | NA |
| 185 | PF3D7_1019100 | Pf3D7_10_v3 | 766168 | - | 5787 | -1.392 | -1.726 | -1.058 | 0.749 | -2.939 | 5.67e-03 | 8.23e-02 | -2.197 | conserved Plasmodium protein, unknown function | NA |
| 304 | PF3D7_1355200 | Pf3D7_13_v3 | 2191058 | - | 3054 | 1.630 | 0.890 | 2.370 | 0.536 | 2.939 | 5.71e-03 | 8.24e-02 | -2.201 | RAP protein, putative | NA |
| 328 | PF3D7_1424500 | Pf3D7_14_v3 | 979464 | + | 142 | -0.825 | -1.714 | 0.063 | 3.590 | -2.929 | 5.82e-03 | 8.37e-02 | -2.272 | small nucleolar RNA snoR27 | NA |
| 293 | PF3D7_1338600 | Pf3D7_13_v3 | 1556659 | - | 3076 | 1.267 | 0.697 | 1.837 | 0.039 | 2.928 | 5.85e-03 | 8.39e-02 | -2.223 | conserved Plasmodium protein, unknown function | NA |
| 311 | PF3D7_1366000 | Pf3D7_13_v3 | 2635213 | + | 276 | 1.117 | 0.785 | 1.450 | 2.202 | 2.924 | 5.91e-03 | 8.45e-02 | -2.247 | conserved Plasmodium protein, unknown function | NA |
| 236 | PF3D7_1210300 | Pf3D7_12_v3 | 465115 | + | 630 | 0.713 | -0.071 | 1.498 | 3.554 | 2.919 | 5.97e-03 | 8.51e-02 | -2.309 | conserved Plasmodium protein, unknown function | NA |
| 249 | PF3D7_1228900 | Pf3D7_12_v3 | 1180670 | - | 4814 | -0.607 | -1.072 | -0.142 | 6.434 | -2.916 | 6.03e-03 | 8.56e-02 | -2.550 | conserved Plasmodium protein, unknown function | NA |
| 8 | PF3D7_0115200 | Pf3D7_01_v3 | 591849 | + | 1339 | -2.053 | -3.146 | -0.961 | -0.691 | -2.917 | 6.08e-03 | 8.59e-02 | -2.271 | rifin | RIF |
| 30 | PF3D7_0311700 | Pf3D7_03_v3 | 502698 | + | 3151 | -1.459 | -2.316 | -0.601 | 0.983 | -2.910 | 6.12e-03 | 8.59e-02 | -2.258 | plasmepsin VI | NA |
| 46 | PF3D7_0412900 | Pf3D7_04_v3 | 576810 | - | 7859 | -1.189 | -1.516 | -0.862 | 2.611 | -2.911 | 6.10e-03 | 8.59e-02 | -2.283 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 43 | PF3D7_0411900 | Pf3D7_04_v3 | 528192 | - | 6294 | -0.914 | -1.287 | -0.541 | 1.934 | -2.905 | 6.20e-03 | 8.62e-02 | -2.287 | DNA polymerase alpha catalytic subunit A | NA |
| 201 | PF3D7_1102700 | Pf3D7_11_v3 | 128789 | + | 276 | -0.587 | -0.982 | -0.192 | 10.475 | -2.905 | 6.20e-03 | 8.62e-02 | -2.719 | early transcribed membrane protein 11.1 | ETRAMP11.1 |
| 279 | PF3D7_1306400 | Pf3D7_13_v3 | 297178 | - | 1182 | -0.466 | -1.327 | 0.396 | 7.247 | -2.904 | 6.22e-03 | 8.62e-02 | -2.626 | 26S protease regulatory subunit 10B, putative | RPT4 |
| 302 | PF3D7_1353500 | Pf3D7_13_v3 | 2144125 | + | 981 | 0.778 | 0.133 | 1.423 | 3.030 | 2.907 | 6.17e-03 | 8.62e-02 | -2.313 | RNA polymerase II transcription factor B subunit 4, putative | TFB4 |
| 2 | mal_rna_17:rRNA | M76611 | 5577 | - | 195 | -1.264 | -1.671 | -0.857 | 4.223 | -2.903 | 6.33e-03 | 8.72e-02 | -2.371 | NA | NA |
| 196 | PF3D7_1037900 | Pf3D7_10_v3 | 1502955 | - | 1368 | 1.025 | 0.342 | 1.708 | 2.136 | 2.897 | 6.34e-03 | 8.72e-02 | -2.307 | conserved Plasmodium protein, unknown function | NA |
| 164 | PF3D7_0915100 | Pf3D7_09_v3 | 643232 | - | 812 | -0.531 | -1.152 | 0.090 | 6.543 | -2.889 | 6.46e-03 | 8.87e-02 | -2.619 | SUMO-conjugating enzyme UBC9 | UBC9 |
| 35 | PF3D7_0323000 | Pf3D7_03_v3 | 968675 | - | 528 | -0.901 | -1.197 | -0.604 | 4.269 | -2.885 | 6.53e-03 | 8.91e-02 | -2.456 | translation machinery-associated protein 7, putative | TMA7 |
| 309 | PF3D7_1365000 | Pf3D7_13_v3 | 2608698 | + | 1047 | -0.839 | -1.102 | -0.577 | 3.815 | -2.886 | 6.52e-03 | 8.91e-02 | -2.386 | conserved Plasmodium protein, unknown function | NA |
| 60 | PF3D7_0501400 | Pf3D7_05_v3 | 74509 | + | 5334 | -1.045 | -1.303 | -0.787 | 10.998 | -2.901 | 6.65e-03 | 8.95e-02 | -2.757 | interspersed repeat antigen | FIRA |
| 75 | PF3D7_0523700 | Pf3D7_05_v3 | 980754 | - | 4601 | 1.308 | 0.350 | 2.266 | 0.920 | 2.876 | 6.69e-03 | 8.95e-02 | -2.331 | conserved Plasmodium membrane protein, unknown function | NA |
| 86 | PF3D7_0601600 | Pf3D7_06_v3 | 68833 | - | 861 | 1.227 | -0.183 | 2.636 | 1.035 | 2.873 | 6.74e-03 | 8.95e-02 | -2.337 | tetratricopeptide repeat protein, putative | NA |
| 93 | PF3D7_0613900 | Pf3D7_06_v3 | 579435 | - | 6462 | 1.190 | -0.386 | 2.767 | 0.943 | 2.874 | 6.72e-03 | 8.95e-02 | -2.334 | myosin E, putative | myoE |
| 96 | PF3D7_0618200 | Pf3D7_06_v3 | 764667 | - | 826 | -0.533 | -1.152 | 0.086 | 7.015 | -2.871 | 6.78e-03 | 8.95e-02 | -2.700 | conserved Plasmodium protein, unknown function | NA |
| 101 | PF3D7_0625600 | Pf3D7_06_v3 | 1039655 | + | 1896 | 0.840 | -0.298 | 1.979 | 5.615 | 2.878 | 6.67e-03 | 8.95e-02 | -2.563 | poly(A) polymerase PAP, putative | NA |
| 163 | PF3D7_0913200 | Pf3D7_09_v3 | 575679 | + | 831 | -0.503 | -1.221 | 0.215 | 8.866 | -2.871 | 6.77e-03 | 8.95e-02 | -2.781 | elongation factor 1-beta | EF-1beta |
| 228 | PF3D7_1142400 | Pf3D7_11_v3 | 1702089 | - | 1554 | 0.593 | -0.547 | 1.732 | 5.970 | 2.878 | 6.64e-03 | 8.95e-02 | -2.601 | coproporphyrinogen-III oxidase | CPO |
| 276 | PF3D7_1303100 | Pf3D7_13_v3 | 159024 | + | 892 | -0.764 | -1.043 | -0.485 | 3.651 | -2.879 | 6.62e-03 | 8.95e-02 | -2.429 | methyltransferase-like protein, putative | NA |
| 334 | PF3D7_1436500 | Pf3D7_14_v3 | 1488706 | + | 1296 | 1.054 | 0.135 | 1.972 | 0.183 | 2.873 | 6.73e-03 | 8.95e-02 | -2.335 | GTP-binding protein, putative | NA |
| 110 | PF3D7_0703700 | Pf3D7_07_v3 | 146645 | - | 750 | 0.495 | -0.380 | 1.370 | 7.579 | 2.868 | 6.82e-03 | 8.98e-02 | -2.733 | conserved Plasmodium protein, unknown function | NA |
| 171 | PF3D7_0931400 | Pf3D7_09_v3 | 1263347 | + | 1484 | -0.845 | -1.123 | -0.567 | 3.547 | -2.862 | 6.93e-03 | 9.00e-02 | -2.430 | conserved Plasmodium protein, unknown function | NA |
| 206 | PF3D7_1108600 | Pf3D7_11_v3 | 369675 | - | 1032 | -0.677 | -1.052 | -0.302 | 9.227 | -2.866 | 6.92e-03 | 9.00e-02 | -2.795 | endoplasmic reticulum-resident calcium binding protein | ERC |
| 306 | PF3D7_1360100 | Pf3D7_13_v3 | 2405249 | - | 969 | -0.524 | -0.778 | -0.270 | 5.582 | -2.864 | 6.88e-03 | 9.00e-02 | -2.583 | RNA-binding protein, putative | NA |
| 329 | PF3D7_1426000 | Pf3D7_14_v3 | 1016133 | - | 486 | 0.490 | 0.116 | 0.864 | 8.627 | 2.863 | 6.90e-03 | 9.00e-02 | -2.789 | 60S ribosomal protein L21 | RPL21 |
| 15 | PF3D7_0202500 | Pf3D7_02_v3 | 127994 | + | 321 | -0.663 | -1.051 | -0.275 | 12.139 | -2.862 | 6.99e-03 | 9.04e-02 | -2.822 | early transcribed membrane protein 2 | ETRAMP2 |
| 157 | PF3D7_0903100 | Pf3D7_09_v3 | 130140 | - | 798 | 0.695 | 0.070 | 1.319 | 4.700 | 2.858 | 7.00e-03 | 9.04e-02 | -2.523 | protein RER1, putative | RER1 |
| 21 | PF3D7_0218700 | Pf3D7_02_v3 | 763491 | - | 1701 | -0.606 | -1.170 | -0.042 | 7.123 | -2.852 | 7.11e-03 | 9.05e-02 | -2.738 | pre-mRNA-processing protein 45, putative | PRP45 |
| 150 | PF3D7_0826100 | Pf3D7_08_v3 | 1113369 | - | 25776 | -0.526 | -0.989 | -0.064 | 10.275 | -2.853 | 7.08e-03 | 9.05e-02 | -2.840 | E3 ubiquitin-protein ligase, putative | NA |
| 192 | PF3D7_1027300 | Pf3D7_10_v3 | 1140589 | - | 2014 | -0.763 | -1.045 | -0.481 | 8.469 | -2.857 | 7.12e-03 | 9.05e-02 | -2.799 | peroxiredoxin | nPrx |
| 250 | PF3D7_1229600 | Pf3D7_12_v3 | 1214043 | - | 3673 | -1.015 | -1.610 | -0.421 | 1.452 | -2.855 | 7.06e-03 | 9.05e-02 | -2.378 | conserved Plasmodium protein, unknown function | NA |
| 266 | PF3D7_1247400 | Pf3D7_12_v3 | 1955124 | - | 915 | -0.628 | -1.393 | 0.137 | 6.237 | -2.853 | 7.10e-03 | 9.05e-02 | -2.676 | peptidyl-prolyl cis-trans isomerase FKBP35 | FKBP35 |
| 78 | PF3D7_0528000 | Pf3D7_05_v3 | 1156205 | - | 375 | 0.784 | -1.169 | 2.738 | 3.675 | 2.849 | 7.17e-03 | 9.08e-02 | -2.472 | proteasome maturation factor UMP1, putative | UMP1 |
| 91 | PF3D7_0612700 | Pf3D7_06_v3 | 525987 | - | 1044 | 0.819 | -0.189 | 1.826 | 1.993 | 2.847 | 7.20e-03 | 9.08e-02 | -2.405 | 6-cysteine protein | P12 |
| 325 | PF3D7_1417700 | Pf3D7_14_v3 | 750330 | + | 1355 | -0.593 | -0.956 | -0.231 | 4.828 | -2.846 | 7.21e-03 | 9.08e-02 | -2.565 | conserved Plasmodium protein, unknown function | NA |
| 49 | PF3D7_0416000 | Pf3D7_04_v3 | 701526 | - | 2637 | -0.691 | -1.273 | -0.108 | 6.293 | -2.845 | 7.24e-03 | 9.09e-02 | -2.698 | RNA-binding protein, putative | NA |
| 26 | PF3D7_0303400 | Pf3D7_03_v3 | 178420 | + | 2708 | 1.000 | 0.628 | 1.372 | 1.354 | 2.833 | 7.46e-03 | 9.26e-02 | -2.423 | palmitoyltransferase DHHC1 | DHHC1 |
| 158 | PF3D7_0905300 | Pf3D7_09_v3 | 251353 | - | 18357 | -0.896 | -1.244 | -0.548 | 2.709 | -2.834 | 7.44e-03 | 9.26e-02 | -2.466 | dynein heavy chain, putative | NA |
| 208 | PF3D7_1111000 | Pf3D7_11_v3 | 434802 | + | 1740 | 0.564 | -0.224 | 1.352 | 5.391 | 2.833 | 7.46e-03 | 9.26e-02 | -2.644 | tRNA m5C-methyltransferase, putative | NA |
| 327 | PF3D7_1423200 | Pf3D7_14_v3 | 933059 | + | 2299 | -0.588 | -0.881 | -0.294 | 5.853 | -2.834 | 7.45e-03 | 9.26e-02 | -2.693 | peptidyl-prolyl cis-trans isomerase | CYP52 |
| 74 | PF3D7_0523300 | Pf3D7_05_v3 | 970266 | - | 697 | 1.001 | 0.197 | 1.805 | 0.700 | 2.826 | 7.59e-03 | 9.29e-02 | -2.431 | conserved Plasmodium protein, unknown function | NA |
| 176 | PF3D7_1002300 | Pf3D7_10_v3 | 117242 | + | 1293 | 0.867 | 0.028 | 1.706 | 1.347 | 2.827 | 7.58e-03 | 9.29e-02 | -2.437 | conserved Plasmodium protein, unknown function | NA |
| 290 | PF3D7_1322100 | Pf3D7_13_v3 | 920971 | + | 8479 | -0.528 | -1.188 | 0.132 | 9.385 | -2.826 | 7.59e-03 | 9.29e-02 | -2.884 | histone-lysine N-methyltransferase SET2 | SET2 |
| 294 | PF3D7_1341100 | Pf3D7_13_v3 | 1632602 | - | 108 | -1.102 | -1.788 | -0.415 | 3.017 | -2.826 | 7.60e-03 | 9.29e-02 | -2.477 | U6 spliceosomal RNA | NA |
| 314 | PF3D7_1373500 | Pf3D7_13_v3 | 2884786 | - | 7555 | -0.781 | -1.245 | -0.318 | 4.450 | -2.826 | 7.60e-03 | 9.29e-02 | -2.573 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 245 | PF3D7_1225200 | Pf3D7_12_v3 | 1024455 | - | 3564 | 0.382 | -0.352 | 1.116 | 6.893 | 2.824 | 7.64e-03 | 9.32e-02 | -2.796 | conserved Plasmodium protein, unknown function | NA |
| 63 | PF3D7_0506700 | Pf3D7_05_v3 | 280886 | + | 2460 | -0.562 | -1.252 | 0.128 | 4.982 | -2.815 | 7.81e-03 | 9.49e-02 | -2.662 | GTPase-activating protein, putative | NA |
| 219 | PF3D7_1126100 | Pf3D7_11_v3 | 1018366 | - | 4130 | 0.858 | 0.339 | 1.377 | 1.600 | 2.811 | 7.90e-03 | 9.57e-02 | -2.475 | autophagy-related protein 7, putative | ATG7 |
| 88 | PF3D7_0607000 | Pf3D7_06_v3 | 293864 | + | 2934 | -0.447 | -1.635 | 0.742 | 10.481 | -2.807 | 7.97e-03 | 9.61e-02 | -2.949 | translation initiation factor IF-2, putative | NA |
| 94 | PF3D7_0614200 | Pf3D7_06_v3 | 593172 | - | 2733 | 0.813 | -0.615 | 2.241 | 3.914 | 2.807 | 7.98e-03 | 9.61e-02 | -2.582 | cytosolic Fe-S cluster assembly factor NAR1, putative | NAR1 |
| 140 | PF3D7_0808600 | Pf3D7_08_v3 | 431165 | + | 7887 | -0.842 | -1.341 | -0.344 | 4.353 | -2.804 | 8.04e-03 | 9.66e-02 | -2.623 | erythrocyte membrane protein 1, PfEMP1 | VAR |
| 126 | PF3D7_0717400 | Pf3D7_07_v3 | 751877 | + | 2256 | -0.411 | -1.105 | 0.283 | 7.621 | -2.802 | 8.08e-03 | 9.67e-02 | -2.889 | queuine tRNA-ribosyltransferase, putative | NA |
| 332 | PF3D7_1431600 | Pf3D7_14_v3 | 1244018 | + | 1389 | 1.118 | 0.219 | 2.016 | 1.156 | 2.798 | 8.15e-03 | 9.74e-02 | -2.493 | succinyl-CoA ligase [ADP-forming] subunit beta, putative | NA |
| 38 | PF3D7_0400200 | Pf3D7_04_v3 | 38955 | + | 1200 | -1.094 | -1.337 | -0.852 | 2.992 | -2.789 | 8.34e-03 | 9.86e-02 | -2.562 | erythrocyte membrane protein 1 (PfEMP1), exon 2, pseudogene | NA |
| 89 | PF3D7_0608700 | Pf3D7_06_v3 | 358391 | + | 1813 | -0.362 | -0.916 | 0.193 | 9.108 | -2.789 | 8.35e-03 | 9.86e-02 | -2.977 | T-complex protein 1 subunit zeta | CCT6 |
| 344 | PF3D7_1450300 | Pf3D7_14_v3 | 2056641 | + | 2598 | 0.766 | 0.095 | 1.436 | 5.175 | 2.789 | 8.35e-03 | 9.86e-02 | -2.742 | NADPH–cytochrome P450 reductase, putative | CPR |
| 351 | PF3D7_1459300 | Pf3D7_14_v3 | 2432177 | + | 570 | 0.803 | 0.428 | 1.178 | 1.803 | 2.789 | 8.35e-03 | 9.86e-02 | -2.529 | OPA3-like protein, putative | NA |
| 320 | PF3D7_1412700 | Pf3D7_14_v3 | 512363 | + | 3660 | -0.569 | -1.258 | 0.119 | 5.935 | -2.787 | 8.40e-03 | 9.89e-02 | -2.800 | AAA family ATPase, putative | NA |
| 113 | PF3D7_0707900 | Pf3D7_07_v3 | 366929 | + | 780 | -0.414 | -1.143 | 0.315 | 7.553 | -2.784 | 8.46e-03 | 9.90e-02 | -2.928 | ribosomal protein S8e, putative | NA |
| 261 | PF3D7_1244100 | Pf3D7_12_v3 | 1847677 | + | 4480 | -0.482 | -0.753 | -0.210 | 5.912 | -2.781 | 8.53e-03 | 9.90e-02 | -2.816 | N-alpha-acetyltransferase 15, NatA auxiliary subunit, putative | NA |
| 321 | PF3D7_1414100 | Pf3D7_14_v3 | 560093 | + | 2232 | 0.548 | -0.272 | 1.368 | 6.992 | 2.781 | 8.51e-03 | 9.90e-02 | -2.898 | conserved Plasmodium protein, unknown function | NA |
| 336 | PF3D7_1439100 | Pf3D7_14_v3 | 1580750 | + | 8108 | -0.574 | -0.972 | -0.177 | 6.512 | -2.782 | 8.50e-03 | 9.90e-02 | -2.863 | DEAD/DEAH box helicase, putative | NA |
| 342 | PF3D7_1447200 | Pf3D7_14_v3 | 1933985 | + | 1791 | -0.429 | -0.856 | -0.001 | 7.819 | -2.781 | 8.52e-03 | 9.90e-02 | -2.951 | conserved Plasmodium protein, unknown function | NA |
| 253 | PF3D7_1232200 | Pf3D7_12_v3 | 1333134 | + | 1763 | -0.941 | -1.961 | 0.079 | 0.865 | -2.777 | 8.60e-03 | 9.95e-02 | -2.534 | dihydrolipoyl dehydrogenase, mitochondrial | LPD1 |
col_annot <- data.frame(row.names = colnames(v$E), stringsAsFactors = F)
col_annot$phenotype[substring(colnames(v$E), 1, 1) == "I"] <- "non-severe"
col_annot$phenotype[substring(colnames(v$E), 1, 1) == "S"] <- "severe"
col_annot$phenotype <- as.factor(col_annot$phenotype)
pheatmap(v2$E[rownames(v$E) %in% top_ring_ruv$GeneID, ], show_rownames = FALSE, scale = "row", annotation_col = col_annot, annotation_colors = list(phenotype = c(`non-severe` = colors[1],
severe = colors[2])))
First GO set enrichment using limma’s mroast.
# genesets <- AnnotationDbi::select(org.Pf.plasmo.db, keys=top_ring_ruv$GeneID, keytype='ALIAS', columns = c('GO','PATH')) go.gene.sets <-
# lapply(split.data.frame(genesets,genesets$GO), function(x) as.vector(x$ALIAS)) kegg.gene.sets <- lapply(split.data.frame(genesets,genesets$PATH),
# function(x) as.vector(x$ALIAS))
MIN_SET_SIZE <- 3
go.gene.df <- fread("./data/go_gene_lists.txt", sep = "\t", data.table = FALSE)
go.gene.sets <- lapply(go.gene.df$Genes, function(x) {
x <- unlist(str_split(x, ","))
x <- x[x != ""]
})
names(go.gene.sets) <- go.gene.df$GO_ID
go.gene.sets <- go.gene.sets[unlist(lapply(go.gene.sets, length)) >= MIN_SET_SIZE]
kegg.gene.df <- fread("./data/kegg_gene_lists.txt", sep = "\t", data.table = FALSE)
kegg.gene.sets <- lapply(kegg.gene.df$Genes, function(x) {
x <- unlist(str_split(x, ","))
x <- x[x != ""]
})
names(kegg.gene.sets) <- kegg.gene.df$KEGG_ID
kegg.gene.sets <- kegg.gene.sets[unlist(lapply(kegg.gene.sets, length)) >= MIN_SET_SIZE]
indices <- ids2indices(go.gene.sets, rownames(v2), remove.empty = TRUE)
go_mr <- mroast(v2, index = indices, design = modRUV, contrast = 2, nrot = 10000, set.statistic = "floormean")
go_cam <- camera(v2, index = indices, design = modRUV, contrast = 2)
go_mr$PValue <- format(go_mr$PValue, scientific = TRUE, digits = 3)
go_mr$FDR <- format(go_mr$FDR, scientific = TRUE, digits = 3)
go_mr$PValue.Mixed <- format(go_mr$PValue.Mixed, scientific = TRUE, digits = 3)
go_mr$FDR.Mixed <- format(go_mr$FDR.Mixed, scientific = TRUE, digits = 3)
kable(go_mr, digits = 3)
| NGenes | PropDown | PropUp | Direction | PValue | FDR | PValue.Mixed | FDR.Mixed | |
|---|---|---|---|---|---|---|---|---|
| GO:0016337 | 54 | 0.852 | 0.019 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0098602 | 54 | 0.852 | 0.019 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0007155 | 69 | 0.696 | 0.014 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0020035 | 93 | 0.634 | 0.032 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0044406 | 93 | 0.634 | 0.032 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0034118 | 87 | 0.632 | 0.011 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0020013 | 87 | 0.632 | 0.011 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0030155 | 87 | 0.632 | 0.011 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0034110 | 87 | 0.632 | 0.011 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0022407 | 87 | 0.632 | 0.011 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0044068 | 88 | 0.625 | 0.011 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0051807 | 93 | 0.624 | 0.022 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0051834 | 93 | 0.624 | 0.022 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0051832 | 93 | 0.624 | 0.022 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0043207 | 93 | 0.624 | 0.022 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0052564 | 93 | 0.624 | 0.022 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0051805 | 93 | 0.624 | 0.022 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0052173 | 93 | 0.624 | 0.022 | Down | 1.00e-04 | 1.46e-03 | 2.00e-04 | 3.08e-03 |
| GO:0051809 | 92 | 0.620 | 0.022 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0020033 | 92 | 0.620 | 0.022 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0044003 | 89 | 0.618 | 0.011 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0051817 | 89 | 0.618 | 0.011 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0009607 | 94 | 0.617 | 0.021 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0035821 | 90 | 0.611 | 0.022 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0009605 | 100 | 0.610 | 0.030 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0022610 | 113 | 0.558 | 0.035 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0065008 | 149 | 0.456 | 0.107 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0044403 | 157 | 0.446 | 0.096 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0044419 | 157 | 0.446 | 0.096 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0051701 | 147 | 0.442 | 0.082 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0050896 | 291 | 0.357 | 0.096 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0065007 | 401 | 0.309 | 0.150 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0050794 | 359 | 0.309 | 0.142 | Down | 1.00e-04 | 1.46e-03 | 1.00e-04 | 1.34e-03 |
| GO:0009405 | 84 | 0.690 | 0.048 | Down | 2.00e-04 | 4.02e-03 | 2.00e-04 | 3.08e-03 |
| GO:0051704 | 189 | 0.444 | 0.095 | Down | 2.00e-04 | 4.02e-03 | 2.00e-04 | 3.08e-03 |
| GO:0050789 | 380 | 0.321 | 0.139 | Down | 2.00e-04 | 4.02e-03 | 1.00e-04 | 1.34e-03 |
| GO:0051707 | 93 | 0.624 | 0.022 | Down | 3.00e-04 | 6.34e-03 | 2.00e-04 | 3.08e-03 |
| GO:0009396 | 4 | 0.500 | 0.000 | Down | 3.00e-04 | 6.34e-03 | 1.60e-03 | 8.44e-03 |
| GO:0016579 | 11 | 0.545 | 0.182 | Down | 4.00e-04 | 8.43e-03 | 7.00e-04 | 5.91e-03 |
| GO:0006848 | 2 | 0.500 | 0.000 | Down | 4.00e-04 | 8.43e-03 | 6.00e-04 | 5.76e-03 |
| GO:0000245 | 9 | 0.667 | 0.111 | Down | 5.00e-04 | 1.01e-02 | 2.00e-04 | 3.08e-03 |
| GO:0070646 | 11 | 0.545 | 0.182 | Down | 5.00e-04 | 1.01e-02 | 6.00e-04 | 5.76e-03 |
| GO:0006760 | 5 | 0.400 | 0.200 | Down | 5.00e-04 | 1.01e-02 | 5.00e-04 | 5.63e-03 |
| GO:0031123 | 8 | 0.125 | 0.750 | Up | 6.00e-04 | 1.20e-02 | 9.00e-04 | 6.35e-03 |
| GO:0016485 | 10 | 0.500 | 0.000 | Down | 7.00e-04 | 1.39e-02 | 1.80e-03 | 8.79e-03 |
| GO:0031167 | 2 | 1.000 | 0.000 | Down | 8.00e-04 | 1.57e-02 | 8.00e-04 | 6.08e-03 |
| GO:0042026 | 3 | 0.667 | 0.000 | Down | 9.00e-04 | 1.71e-02 | 1.40e-03 | 7.93e-03 |
| GO:0051604 | 12 | 0.417 | 0.000 | Down | 9.00e-04 | 1.71e-02 | 4.00e-03 | 1.30e-02 |
| GO:0008154 | 1 | 1.000 | 0.000 | Down | 1.00e-03 | 1.73e-02 | 1.00e-03 | 6.73e-03 |
| GO:0006206 | 6 | 0.500 | 0.000 | Down | 1.00e-03 | 1.73e-02 | 4.40e-03 | 1.37e-02 |
| GO:0009112 | 7 | 0.429 | 0.000 | Down | 1.00e-03 | 1.73e-02 | 5.10e-03 | 1.49e-02 |
| GO:0019220 | 27 | 0.222 | 0.407 | Up | 1.00e-03 | 1.73e-02 | 1.00e-04 | 1.34e-03 |
| GO:0006950 | 91 | 0.286 | 0.165 | Down | 1.00e-03 | 1.73e-02 | 4.00e-04 | 5.11e-03 |
| GO:0006207 | 5 | 0.400 | 0.000 | Down | 1.30e-03 | 2.23e-02 | 1.20e-02 | 2.58e-02 |
| GO:0046112 | 5 | 0.400 | 0.000 | Down | 1.50e-03 | 2.45e-02 | 1.32e-02 | 2.77e-02 |
| GO:0048519 | 16 | 0.312 | 0.375 | Down | 1.50e-03 | 2.45e-02 | 3.00e-04 | 4.38e-03 |
| GO:0044699 | 809 | 0.235 | 0.178 | Down | 1.50e-03 | 2.45e-02 | 5.00e-04 | 5.63e-03 |
| GO:0006457 | 72 | 0.417 | 0.097 | Down | 1.60e-03 | 2.53e-02 | 6.00e-04 | 5.76e-03 |
| GO:0019856 | 5 | 0.400 | 0.000 | Down | 1.60e-03 | 2.53e-02 | 1.44e-02 | 2.91e-02 |
| GO:0007007 | 3 | 0.667 | 0.000 | Down | 1.80e-03 | 2.72e-02 | 5.50e-03 | 1.53e-02 |
| GO:0090151 | 3 | 0.667 | 0.000 | Down | 1.80e-03 | 2.72e-02 | 5.70e-03 | 1.55e-02 |
| GO:0071840 | 251 | 0.283 | 0.151 | Down | 1.80e-03 | 2.72e-02 | 1.20e-03 | 7.25e-03 |
| GO:0045039 | 3 | 0.667 | 0.000 | Down | 1.90e-03 | 2.79e-02 | 6.00e-03 | 1.60e-02 |
| GO:0051174 | 27 | 0.222 | 0.407 | Up | 1.90e-03 | 2.79e-02 | 5.00e-04 | 5.63e-03 |
| GO:0042325 | 5 | 0.000 | 0.800 | Up | 2.00e-03 | 2.85e-02 | 9.70e-03 | 2.20e-02 |
| GO:0043631 | 6 | 0.167 | 0.667 | Up | 2.00e-03 | 2.85e-02 | 2.00e-03 | 9.12e-03 |
| GO:0007006 | 3 | 0.667 | 0.000 | Down | 2.10e-03 | 2.95e-02 | 5.20e-03 | 1.50e-02 |
| GO:0006518 | 11 | 0.364 | 0.182 | Down | 2.20e-03 | 3.00e-02 | 2.80e-03 | 1.07e-02 |
| GO:0009260 | 18 | 0.111 | 0.333 | Up | 2.20e-03 | 3.00e-02 | 1.90e-03 | 9.01e-03 |
| GO:0001817 | 3 | 0.667 | 0.000 | Down | 2.40e-03 | 3.15e-02 | 2.40e-03 | 9.98e-03 |
| GO:0006730 | 4 | 0.500 | 0.250 | Down | 2.40e-03 | 3.15e-02 | 6.00e-04 | 5.76e-03 |
| GO:0006575 | 13 | 0.308 | 0.308 | Down | 2.40e-03 | 3.15e-02 | 8.00e-04 | 6.08e-03 |
| GO:0016568 | 18 | 0.389 | 0.167 | Down | 2.50e-03 | 3.24e-02 | 1.20e-03 | 7.25e-03 |
| GO:0016571 | 5 | 0.600 | 0.000 | Down | 2.70e-03 | 3.44e-02 | 2.50e-03 | 1.02e-02 |
| GO:0001932 | 5 | 0.000 | 0.800 | Up | 2.80e-03 | 3.44e-02 | 9.80e-03 | 2.22e-02 |
| GO:0031399 | 5 | 0.000 | 0.800 | Up | 2.80e-03 | 3.44e-02 | 1.03e-02 | 2.27e-02 |
| GO:0002098 | 4 | 0.000 | 0.500 | Up | 2.80e-03 | 3.44e-02 | 1.13e-02 | 2.45e-02 |
| GO:0008033 | 37 | 0.108 | 0.351 | Up | 2.90e-03 | 3.48e-02 | 1.10e-03 | 7.13e-03 |
| GO:0015914 | 4 | 0.250 | 0.250 | Down | 2.90e-03 | 3.48e-02 | 1.00e-04 | 1.34e-03 |
| GO:0042221 | 68 | 0.250 | 0.088 | Down | 3.00e-03 | 3.55e-02 | 1.60e-03 | 8.44e-03 |
| GO:0009152 | 17 | 0.118 | 0.353 | Up | 3.10e-03 | 3.63e-02 | 1.70e-03 | 8.55e-03 |
| GO:0044085 | 153 | 0.301 | 0.150 | Down | 3.20e-03 | 3.67e-02 | 1.00e-03 | 6.73e-03 |
| GO:0051239 | 3 | 0.667 | 0.000 | Down | 3.30e-03 | 3.67e-02 | 3.30e-03 | 1.17e-02 |
| GO:0009201 | 8 | 0.125 | 0.625 | Up | 3.40e-03 | 3.67e-02 | 2.30e-03 | 9.98e-03 |
| GO:1902580 | 33 | 0.273 | 0.061 | Down | 3.40e-03 | 3.67e-02 | 7.30e-03 | 1.80e-02 |
| GO:1901137 | 55 | 0.145 | 0.327 | Up | 3.50e-03 | 3.67e-02 | 8.00e-04 | 6.08e-03 |
| GO:0009206 | 8 | 0.125 | 0.625 | Up | 3.60e-03 | 3.67e-02 | 2.40e-03 | 9.98e-03 |
| GO:0006378 | 5 | 0.200 | 0.600 | Up | 3.70e-03 | 3.67e-02 | 2.60e-03 | 1.05e-02 |
| GO:0050790 | 27 | 0.259 | 0.370 | Up | 3.70e-03 | 3.67e-02 | 7.00e-04 | 5.91e-03 |
| GO:0006325 | 29 | 0.345 | 0.172 | Down | 3.70e-03 | 3.67e-02 | 1.40e-03 | 7.93e-03 |
| GO:0006281 | 50 | 0.160 | 0.220 | Up | 3.70e-03 | 3.67e-02 | 2.90e-03 | 1.09e-02 |
| GO:0033554 | 55 | 0.200 | 0.200 | Up | 3.80e-03 | 3.67e-02 | 1.90e-03 | 9.01e-03 |
| GO:0009628 | 22 | 0.500 | 0.091 | Down | 3.90e-03 | 3.67e-02 | 1.90e-03 | 9.01e-03 |
| GO:0043603 | 15 | 0.267 | 0.133 | Down | 3.90e-03 | 3.67e-02 | 1.37e-02 | 2.82e-02 |
| GO:0006996 | 110 | 0.264 | 0.145 | Down | 3.90e-03 | 3.67e-02 | 2.00e-03 | 9.12e-03 |
| GO:0034641 | 602 | 0.236 | 0.199 | Down | 3.90e-03 | 3.67e-02 | 5.00e-04 | 5.63e-03 |
| GO:0044260 | 985 | 0.236 | 0.196 | Down | 3.90e-03 | 3.67e-02 | 6.00e-04 | 5.76e-03 |
| GO:0070585 | 14 | 0.500 | 0.071 | Down | 4.00e-03 | 3.67e-02 | 3.70e-03 | 1.25e-02 |
| GO:0007005 | 14 | 0.500 | 0.071 | Down | 4.00e-03 | 3.67e-02 | 4.10e-03 | 1.31e-02 |
| GO:0071806 | 16 | 0.312 | 0.062 | Down | 4.00e-03 | 3.67e-02 | 7.60e-03 | 1.86e-02 |
| GO:0006396 | 207 | 0.295 | 0.242 | Down | 4.10e-03 | 3.67e-02 | 4.00e-04 | 5.11e-03 |
| GO:0009987 | 1474 | 0.224 | 0.190 | Down | 4.10e-03 | 3.67e-02 | 6.00e-04 | 5.76e-03 |
| GO:0072594 | 32 | 0.281 | 0.062 | Down | 4.20e-03 | 3.67e-02 | 7.20e-03 | 1.79e-02 |
| GO:0044238 | 1268 | 0.226 | 0.189 | Down | 4.20e-03 | 3.67e-02 | 5.00e-04 | 5.63e-03 |
| GO:0043414 | 18 | 0.278 | 0.278 | Down | 4.30e-03 | 3.67e-02 | 7.00e-04 | 5.91e-03 |
| GO:0016043 | 183 | 0.273 | 0.148 | Down | 4.30e-03 | 3.67e-02 | 1.30e-03 | 7.67e-03 |
| GO:0016070 | 365 | 0.266 | 0.227 | Down | 4.30e-03 | 3.67e-02 | 7.00e-04 | 5.91e-03 |
| GO:0008380 | 81 | 0.407 | 0.173 | Down | 4.40e-03 | 3.67e-02 | 8.00e-04 | 6.08e-03 |
| GO:0042559 | 6 | 0.333 | 0.333 | Down | 4.40e-03 | 3.67e-02 | 1.50e-03 | 8.22e-03 |
| GO:0006725 | 583 | 0.233 | 0.201 | Down | 4.40e-03 | 3.67e-02 | 5.00e-04 | 5.63e-03 |
| GO:0046483 | 584 | 0.233 | 0.202 | Down | 4.40e-03 | 3.67e-02 | 4.00e-04 | 5.11e-03 |
| GO:0031124 | 5 | 0.200 | 0.600 | Up | 4.50e-03 | 3.67e-02 | 2.70e-03 | 1.05e-02 |
| GO:1901360 | 587 | 0.232 | 0.201 | Down | 4.50e-03 | 3.67e-02 | 2.00e-04 | 3.08e-03 |
| GO:0006807 | 627 | 0.230 | 0.203 | Down | 4.50e-03 | 3.67e-02 | 6.00e-04 | 5.76e-03 |
| GO:0043933 | 107 | 0.290 | 0.140 | Down | 4.60e-03 | 3.67e-02 | 8.00e-04 | 6.08e-03 |
| GO:0010467 | 524 | 0.258 | 0.200 | Down | 4.60e-03 | 3.67e-02 | 4.00e-04 | 5.11e-03 |
| GO:0043170 | 1043 | 0.232 | 0.196 | Down | 4.60e-03 | 3.67e-02 | 6.00e-04 | 5.76e-03 |
| GO:0009266 | 21 | 0.476 | 0.095 | Down | 4.70e-03 | 3.67e-02 | 1.90e-03 | 9.01e-03 |
| GO:0065009 | 27 | 0.259 | 0.370 | Up | 4.70e-03 | 3.67e-02 | 9.00e-04 | 6.35e-03 |
| GO:0046390 | 19 | 0.105 | 0.316 | Up | 4.70e-03 | 3.67e-02 | 5.20e-03 | 1.50e-02 |
| GO:0006139 | 560 | 0.238 | 0.196 | Down | 4.70e-03 | 3.67e-02 | 3.00e-04 | 4.38e-03 |
| GO:0006094 | 5 | 0.800 | 0.000 | Down | 4.80e-03 | 3.67e-02 | 5.10e-03 | 1.49e-02 |
| GO:0042398 | 11 | 0.273 | 0.273 | Down | 4.80e-03 | 3.67e-02 | 2.30e-03 | 9.98e-03 |
| GO:0051276 | 43 | 0.326 | 0.140 | Down | 4.90e-03 | 3.67e-02 | 4.60e-03 | 1.41e-02 |
| GO:0033365 | 33 | 0.273 | 0.091 | Down | 4.90e-03 | 3.67e-02 | 6.60e-03 | 1.70e-02 |
| GO:0072655 | 14 | 0.500 | 0.071 | Down | 5.00e-03 | 3.67e-02 | 5.30e-03 | 1.52e-02 |
| GO:0006626 | 14 | 0.500 | 0.071 | Down | 5.00e-03 | 3.67e-02 | 5.40e-03 | 1.52e-02 |
| GO:0072657 | 11 | 0.273 | 0.091 | Down | 5.00e-03 | 3.67e-02 | 5.30e-03 | 1.52e-02 |
| GO:0090304 | 471 | 0.246 | 0.210 | Down | 5.00e-03 | 3.67e-02 | 7.00e-04 | 5.91e-03 |
| GO:0006974 | 51 | 0.176 | 0.216 | Up | 5.00e-03 | 3.67e-02 | 4.10e-03 | 1.31e-02 |
| GO:0045454 | 29 | 0.345 | 0.207 | Down | 5.10e-03 | 3.72e-02 | 3.00e-04 | 4.38e-03 |
| GO:0002097 | 4 | 0.000 | 0.500 | Up | 5.20e-03 | 3.76e-02 | 1.11e-02 | 2.42e-02 |
| GO:0046364 | 6 | 0.667 | 0.000 | Down | 5.30e-03 | 3.79e-02 | 6.80e-03 | 1.74e-02 |
| GO:0016255 | 4 | 0.000 | 1.000 | Up | 5.40e-03 | 3.79e-02 | 6.30e-03 | 1.66e-02 |
| GO:0019319 | 6 | 0.667 | 0.000 | Down | 5.40e-03 | 3.79e-02 | 6.40e-03 | 1.67e-02 |
| GO:0006605 | 34 | 0.265 | 0.059 | Down | 5.40e-03 | 3.79e-02 | 9.30e-03 | 2.14e-02 |
| GO:0031338 | 14 | 0.000 | 0.357 | Up | 5.50e-03 | 3.83e-02 | 3.40e-03 | 1.20e-02 |
| GO:0071704 | 1299 | 0.221 | 0.193 | Down | 5.60e-03 | 3.86e-02 | 6.00e-04 | 5.76e-03 |
| GO:0051188 | 30 | 0.067 | 0.333 | Up | 5.70e-03 | 3.86e-02 | 2.50e-03 | 1.02e-02 |
| GO:0006520 | 75 | 0.280 | 0.200 | Down | 5.70e-03 | 3.86e-02 | 1.30e-03 | 7.67e-03 |
| GO:0090150 | 11 | 0.273 | 0.091 | Down | 5.70e-03 | 3.86e-02 | 6.00e-03 | 1.60e-02 |
| GO:0009408 | 20 | 0.450 | 0.100 | Down | 5.80e-03 | 3.86e-02 | 1.70e-03 | 8.55e-03 |
| GO:0019222 | 152 | 0.243 | 0.184 | Down | 5.80e-03 | 3.86e-02 | 2.70e-03 | 1.05e-02 |
| GO:0006813 | 4 | 0.000 | 0.500 | Up | 5.90e-03 | 3.86e-02 | 1.87e-02 | 3.57e-02 |
| GO:0008213 | 8 | 0.375 | 0.250 | Down | 5.90e-03 | 3.86e-02 | 1.50e-03 | 8.22e-03 |
| GO:0016071 | 100 | 0.310 | 0.240 | Down | 5.90e-03 | 3.86e-02 | 7.00e-04 | 5.91e-03 |
| GO:0035966 | 12 | 0.417 | 0.083 | Down | 6.00e-03 | 3.87e-02 | 2.70e-03 | 1.05e-02 |
| GO:0008152 | 1383 | 0.221 | 0.195 | Down | 6.00e-03 | 3.87e-02 | 6.00e-04 | 5.76e-03 |
| GO:0006479 | 8 | 0.375 | 0.250 | Down | 6.10e-03 | 3.87e-02 | 1.70e-03 | 8.55e-03 |
| GO:0033124 | 18 | 0.222 | 0.333 | Up | 6.10e-03 | 3.87e-02 | 8.00e-04 | 6.08e-03 |
| GO:0032012 | 3 | 0.333 | 0.667 | Up | 6.20e-03 | 3.87e-02 | 1.20e-03 | 7.25e-03 |
| GO:0006164 | 19 | 0.105 | 0.316 | Up | 6.20e-03 | 3.87e-02 | 1.90e-03 | 9.01e-03 |
| GO:0044237 | 1238 | 0.226 | 0.193 | Down | 6.20e-03 | 3.87e-02 | 9.00e-04 | 6.35e-03 |
| GO:0010608 | 25 | 0.360 | 0.080 | Down | 6.30e-03 | 3.91e-02 | 4.70e-03 | 1.42e-02 |
| GO:0032312 | 2 | 0.000 | 1.000 | Up | 6.40e-03 | 3.92e-02 | 6.40e-03 | 1.67e-02 |
| GO:0032259 | 26 | 0.269 | 0.231 | Down | 6.40e-03 | 3.92e-02 | 2.00e-04 | 3.08e-03 |
| GO:0009145 | 9 | 0.222 | 0.556 | Up | 6.50e-03 | 3.96e-02 | 4.00e-04 | 5.11e-03 |
| GO:0043087 | 18 | 0.222 | 0.333 | Up | 6.60e-03 | 4.00e-02 | 1.20e-03 | 7.25e-03 |
| GO:0051051 | 3 | 0.000 | 1.000 | Up | 6.80e-03 | 4.04e-02 | 7.30e-03 | 1.80e-02 |
| GO:0006271 | 5 | 0.000 | 0.600 | Up | 6.80e-03 | 4.04e-02 | 1.73e-02 | 3.34e-02 |
| GO:0042493 | 51 | 0.235 | 0.078 | Down | 6.80e-03 | 4.04e-02 | 2.40e-03 | 9.98e-03 |
| GO:0006265 | 3 | 0.667 | 0.333 | Down | 7.00e-03 | 4.14e-02 | 1.60e-03 | 8.44e-03 |
| GO:0000154 | 5 | 0.600 | 0.000 | Down | 7.30e-03 | 4.24e-02 | 4.40e-03 | 1.37e-02 |
| GO:0019752 | 129 | 0.279 | 0.178 | Down | 7.30e-03 | 4.24e-02 | 2.50e-03 | 1.02e-02 |
| GO:0009894 | 22 | 0.364 | 0.273 | Down | 7.40e-03 | 4.24e-02 | 8.00e-04 | 6.08e-03 |
| GO:1901564 | 179 | 0.246 | 0.201 | Down | 7.40e-03 | 4.24e-02 | 9.00e-04 | 6.35e-03 |
| GO:0019538 | 628 | 0.231 | 0.182 | Down | 7.40e-03 | 4.24e-02 | 8.00e-04 | 6.08e-03 |
| GO:0030029 | 10 | 0.300 | 0.200 | Down | 7.50e-03 | 4.27e-02 | 4.30e-03 | 1.36e-02 |
| GO:0006986 | 12 | 0.417 | 0.083 | Down | 7.60e-03 | 4.28e-02 | 3.20e-03 | 1.16e-02 |
| GO:0000377 | 59 | 0.407 | 0.186 | Down | 7.60e-03 | 4.28e-02 | 6.00e-04 | 5.76e-03 |
| GO:0042451 | 17 | 0.176 | 0.353 | Up | 7.70e-03 | 4.31e-02 | 1.20e-03 | 7.25e-03 |
| GO:0010033 | 13 | 0.385 | 0.077 | Down | 7.80e-03 | 4.32e-02 | 3.40e-03 | 1.20e-02 |
| GO:0043436 | 130 | 0.277 | 0.177 | Down | 7.80e-03 | 4.32e-02 | 2.00e-03 | 9.12e-03 |
| GO:0044724 | 24 | 0.583 | 0.042 | Down | 7.90e-03 | 4.32e-02 | 7.70e-03 | 1.87e-02 |
| GO:0000375 | 64 | 0.422 | 0.172 | Down | 7.90e-03 | 4.32e-02 | 1.10e-03 | 7.13e-03 |
| GO:0000398 | 59 | 0.407 | 0.186 | Down | 8.10e-03 | 4.38e-02 | 8.00e-04 | 6.08e-03 |
| GO:0006397 | 93 | 0.323 | 0.258 | Down | 8.10e-03 | 4.38e-02 | 9.00e-04 | 6.35e-03 |
| GO:0034968 | 4 | 0.500 | 0.000 | Down | 8.20e-03 | 4.39e-02 | 6.50e-03 | 1.68e-02 |
| GO:0080090 | 141 | 0.234 | 0.184 | Down | 8.20e-03 | 4.39e-02 | 2.40e-03 | 9.98e-03 |
| GO:0000079 | 3 | 0.000 | 1.000 | Up | 8.30e-03 | 4.39e-02 | 8.60e-03 | 2.02e-02 |
| GO:0046129 | 17 | 0.176 | 0.353 | Up | 8.30e-03 | 4.39e-02 | 1.20e-03 | 7.25e-03 |
| GO:0006096 | 17 | 0.647 | 0.059 | Down | 8.40e-03 | 4.42e-02 | 7.60e-03 | 1.86e-02 |
| GO:0009247 | 12 | 0.083 | 0.583 | Up | 8.60e-03 | 4.45e-02 | 1.01e-02 | 2.26e-02 |
| GO:0051336 | 21 | 0.286 | 0.333 | Up | 8.60e-03 | 4.45e-02 | 2.00e-04 | 3.08e-03 |
| GO:0030036 | 8 | 0.250 | 0.250 | Down | 8.60e-03 | 4.45e-02 | 5.10e-03 | 1.49e-02 |
| GO:0006338 | 4 | 0.500 | 0.000 | Down | 8.70e-03 | 4.46e-02 | 1.33e-02 | 2.77e-02 |
| GO:0006140 | 19 | 0.263 | 0.316 | Up | 8.70e-03 | 4.46e-02 | 7.00e-04 | 5.91e-03 |
| GO:0016052 | 24 | 0.583 | 0.042 | Down | 8.80e-03 | 4.46e-02 | 9.40e-03 | 2.15e-02 |
| GO:0000910 | 4 | 0.000 | 0.500 | Up | 8.80e-03 | 4.46e-02 | 1.90e-02 | 3.60e-02 |
| GO:0006081 | 6 | 0.167 | 0.333 | Up | 8.90e-03 | 4.49e-02 | 6.40e-03 | 1.67e-02 |
| GO:0016051 | 12 | 0.500 | 0.000 | Down | 9.00e-03 | 4.50e-02 | 7.80e-03 | 1.89e-02 |
| GO:0030811 | 19 | 0.263 | 0.316 | Up | 9.10e-03 | 4.50e-02 | 1.10e-03 | 7.13e-03 |
| GO:0006790 | 20 | 0.100 | 0.300 | Up | 9.10e-03 | 4.50e-02 | 9.50e-03 | 2.17e-02 |
| GO:0033121 | 19 | 0.263 | 0.316 | Up | 9.20e-03 | 4.50e-02 | 9.00e-04 | 6.35e-03 |
| GO:0034660 | 124 | 0.266 | 0.234 | Down | 9.20e-03 | 4.50e-02 | 8.00e-04 | 6.08e-03 |
| GO:0043412 | 249 | 0.157 | 0.225 | Up | 9.20e-03 | 4.50e-02 | 1.20e-03 | 7.25e-03 |
| GO:0006475 | 4 | 0.000 | 0.750 | Up | 9.30e-03 | 4.50e-02 | 3.31e-02 | 5.28e-02 |
| GO:0009118 | 19 | 0.263 | 0.316 | Up | 9.30e-03 | 4.50e-02 | 5.00e-04 | 5.63e-03 |
| GO:0022616 | 5 | 0.000 | 0.600 | Up | 9.40e-03 | 4.53e-02 | 2.12e-02 | 3.86e-02 |
| GO:0051651 | 2 | 0.000 | 1.000 | Up | 9.60e-03 | 4.55e-02 | 9.70e-03 | 2.20e-02 |
| GO:0006082 | 130 | 0.277 | 0.177 | Down | 9.60e-03 | 4.55e-02 | 2.70e-03 | 1.05e-02 |
| GO:1900542 | 19 | 0.263 | 0.316 | Up | 9.80e-03 | 4.55e-02 | 6.00e-04 | 5.76e-03 |
| GO:1901607 | 11 | 0.182 | 0.091 | Down | 9.80e-03 | 4.55e-02 | 2.06e-02 | 3.77e-02 |
| GO:0018393 | 4 | 0.000 | 0.750 | Up | 9.90e-03 | 4.55e-02 | 3.28e-02 | 5.26e-02 |
| GO:0009452 | 6 | 0.333 | 0.167 | Down | 9.90e-03 | 4.55e-02 | 2.20e-03 | 9.78e-03 |
| GO:0022613 | 98 | 0.327 | 0.143 | Down | 9.90e-03 | 4.55e-02 | 2.40e-03 | 9.98e-03 |
| GO:0071900 | 3 | 0.000 | 1.000 | Up | 1.00e-02 | 4.55e-02 | 1.01e-02 | 2.26e-02 |
| GO:0006379 | 4 | 0.250 | 0.750 | Up | 1.00e-02 | 4.55e-02 | 7.30e-03 | 1.80e-02 |
| GO:0046467 | 13 | 0.077 | 0.615 | Up | 1.00e-02 | 4.55e-02 | 1.01e-02 | 2.26e-02 |
| GO:0006465 | 7 | 0.429 | 0.000 | Down | 1.00e-02 | 4.55e-02 | 2.42e-02 | 4.28e-02 |
| GO:0009108 | 24 | 0.083 | 0.292 | Up | 1.00e-02 | 4.55e-02 | 1.70e-03 | 8.55e-03 |
| GO:0016573 | 4 | 0.000 | 0.750 | Up | 1.01e-02 | 4.57e-02 | 3.26e-02 | 5.26e-02 |
| GO:0044743 | 6 | 0.667 | 0.000 | Down | 1.02e-02 | 4.57e-02 | 8.70e-03 | 2.04e-02 |
| GO:0042558 | 7 | 0.286 | 0.429 | Down | 1.02e-02 | 4.57e-02 | 1.30e-03 | 7.67e-03 |
| GO:0010468 | 116 | 0.224 | 0.147 | Down | 1.03e-02 | 4.60e-02 | 5.70e-03 | 1.55e-02 |
| GO:0048523 | 10 | 0.300 | 0.200 | Down | 1.04e-02 | 4.60e-02 | 7.50e-03 | 1.84e-02 |
| GO:0006754 | 7 | 0.143 | 0.571 | Up | 1.05e-02 | 4.60e-02 | 7.00e-03 | 1.77e-02 |
| GO:0034622 | 64 | 0.328 | 0.141 | Down | 1.05e-02 | 4.60e-02 | 3.10e-03 | 1.14e-02 |
| GO:0031329 | 19 | 0.263 | 0.316 | Up | 1.05e-02 | 4.60e-02 | 9.00e-04 | 6.35e-03 |
| GO:0006410 | 5 | 0.000 | 0.600 | Up | 1.06e-02 | 4.60e-02 | 2.09e-02 | 3.81e-02 |
| GO:0044712 | 59 | 0.339 | 0.136 | Down | 1.06e-02 | 4.60e-02 | 3.70e-03 | 1.25e-02 |
| GO:0006399 | 78 | 0.231 | 0.269 | Up | 1.07e-02 | 4.62e-02 | 1.60e-03 | 8.44e-03 |
| GO:0032507 | 2 | 0.000 | 1.000 | Up | 1.08e-02 | 4.63e-02 | 1.12e-02 | 2.43e-02 |
| GO:0036260 | 6 | 0.333 | 0.167 | Down | 1.09e-02 | 4.63e-02 | 2.00e-03 | 9.12e-03 |
| GO:0008616 | 4 | 0.500 | 0.250 | Down | 1.10e-02 | 4.63e-02 | 4.70e-03 | 1.42e-02 |
| GO:0046116 | 4 | 0.500 | 0.250 | Down | 1.10e-02 | 4.63e-02 | 5.80e-03 | 1.57e-02 |
| GO:0033043 | 19 | 0.053 | 0.316 | Up | 1.10e-02 | 4.63e-02 | 3.80e-03 | 1.26e-02 |
| GO:0060255 | 128 | 0.234 | 0.164 | Down | 1.10e-02 | 4.63e-02 | 4.00e-03 | 1.30e-02 |
| GO:0006090 | 24 | 0.458 | 0.167 | Down | 1.11e-02 | 4.65e-02 | 4.50e-03 | 1.40e-02 |
| GO:0018394 | 4 | 0.000 | 0.750 | Up | 1.13e-02 | 4.65e-02 | 3.33e-02 | 5.29e-02 |
| GO:0006006 | 12 | 0.583 | 0.000 | Down | 1.13e-02 | 4.65e-02 | 1.26e-02 | 2.66e-02 |
| GO:0006289 | 11 | 0.182 | 0.364 | Up | 1.13e-02 | 4.65e-02 | 9.00e-04 | 6.35e-03 |
| GO:0044267 | 562 | 0.237 | 0.181 | Down | 1.13e-02 | 4.65e-02 | 1.60e-03 | 8.44e-03 |
| GO:0010629 | 6 | 0.500 | 0.167 | Down | 1.14e-02 | 4.68e-02 | 2.90e-03 | 1.09e-02 |
| GO:0042158 | 18 | 0.000 | 0.556 | Up | 1.17e-02 | 4.78e-02 | 1.35e-02 | 2.79e-02 |
| GO:0043241 | 6 | 0.000 | 0.500 | Up | 1.18e-02 | 4.80e-02 | 6.18e-02 | 8.30e-02 |
| GO:0044271 | 158 | 0.196 | 0.215 | Up | 1.21e-02 | 4.90e-02 | 4.00e-04 | 5.11e-03 |
| GO:0042176 | 3 | 1.000 | 0.000 | Down | 1.22e-02 | 4.90e-02 | 1.22e-02 | 2.61e-02 |
| GO:0065003 | 74 | 0.297 | 0.135 | Down | 1.22e-02 | 4.90e-02 | 2.40e-03 | 9.98e-03 |
| GO:0016072 | 48 | 0.312 | 0.188 | Down | 1.23e-02 | 4.90e-02 | 1.70e-03 | 8.55e-03 |
| GO:0006497 | 18 | 0.000 | 0.556 | Up | 1.24e-02 | 4.90e-02 | 1.34e-02 | 2.78e-02 |
| GO:0042157 | 18 | 0.000 | 0.556 | Up | 1.25e-02 | 4.90e-02 | 1.34e-02 | 2.78e-02 |
| GO:0045017 | 17 | 0.059 | 0.471 | Up | 1.25e-02 | 4.90e-02 | 6.90e-03 | 1.76e-02 |
| GO:0043543 | 15 | 0.000 | 0.467 | Up | 1.25e-02 | 4.90e-02 | 3.38e-02 | 5.33e-02 |
| GO:0045859 | 4 | 0.000 | 0.750 | Up | 1.26e-02 | 4.90e-02 | 2.04e-02 | 3.74e-02 |
| GO:0051186 | 45 | 0.156 | 0.267 | Up | 1.26e-02 | 4.90e-02 | 8.00e-04 | 6.08e-03 |
| GO:0043549 | 4 | 0.000 | 0.750 | Up | 1.27e-02 | 4.90e-02 | 1.91e-02 | 3.61e-02 |
| GO:0022607 | 83 | 0.289 | 0.145 | Down | 1.27e-02 | 4.90e-02 | 2.00e-03 | 9.12e-03 |
| GO:0006413 | 48 | 0.208 | 0.167 | Down | 1.27e-02 | 4.90e-02 | 7.20e-03 | 1.79e-02 |
| GO:0031323 | 139 | 0.216 | 0.194 | Down | 1.28e-02 | 4.90e-02 | 2.30e-03 | 9.98e-03 |
| GO:0006664 | 13 | 0.077 | 0.538 | Up | 1.29e-02 | 4.90e-02 | 1.52e-02 | 3.03e-02 |
| GO:0035383 | 7 | 0.000 | 0.429 | Up | 1.29e-02 | 4.90e-02 | 1.67e-02 | 3.24e-02 |
| GO:0009892 | 8 | 0.375 | 0.250 | Down | 1.29e-02 | 4.90e-02 | 1.50e-03 | 8.22e-03 |
| GO:0043648 | 10 | 0.300 | 0.000 | Down | 1.30e-02 | 4.91e-02 | 3.77e-02 | 5.73e-02 |
| GO:0006259 | 120 | 0.175 | 0.192 | Up | 1.33e-02 | 4.99e-02 | 1.20e-03 | 7.25e-03 |
| GO:0090305 | 10 | 0.200 | 0.500 | Up | 1.34e-02 | 4.99e-02 | 3.90e-03 | 1.28e-02 |
| GO:0007275 | 6 | 0.000 | 0.333 | Up | 1.34e-02 | 4.99e-02 | 1.59e-02 | 3.15e-02 |
| GO:0007018 | 19 | 0.263 | 0.211 | Down | 1.34e-02 | 4.99e-02 | 8.00e-04 | 6.08e-03 |
| GO:0015985 | 7 | 0.143 | 0.571 | Up | 1.35e-02 | 4.99e-02 | 9.10e-03 | 2.11e-02 |
| GO:0006364 | 48 | 0.312 | 0.188 | Down | 1.35e-02 | 4.99e-02 | 2.00e-03 | 9.12e-03 |
| GO:0015986 | 7 | 0.143 | 0.571 | Up | 1.37e-02 | 5.02e-02 | 9.30e-03 | 2.14e-02 |
| GO:0065002 | 11 | 0.364 | 0.000 | Down | 1.37e-02 | 5.02e-02 | 2.01e-02 | 3.72e-02 |
| GO:0019725 | 42 | 0.262 | 0.238 | Up | 1.41e-02 | 5.15e-02 | 5.00e-04 | 5.63e-03 |
| GO:0006417 | 22 | 0.318 | 0.091 | Down | 1.42e-02 | 5.16e-02 | 8.20e-03 | 1.95e-02 |
| GO:0044092 | 3 | 0.667 | 0.333 | Down | 1.43e-02 | 5.16e-02 | 1.00e-03 | 6.73e-03 |
| GO:0043086 | 3 | 0.667 | 0.333 | Down | 1.44e-02 | 5.16e-02 | 1.20e-03 | 7.25e-03 |
| GO:0071826 | 31 | 0.323 | 0.097 | Down | 1.44e-02 | 5.16e-02 | 1.39e-02 | 2.85e-02 |
| GO:0044707 | 7 | 0.000 | 0.286 | Up | 1.44e-02 | 5.16e-02 | 2.56e-02 | 4.48e-02 |
| GO:0006875 | 4 | 0.250 | 0.750 | Up | 1.45e-02 | 5.18e-02 | 1.90e-03 | 9.01e-03 |
| GO:0019318 | 14 | 0.500 | 0.000 | Down | 1.48e-02 | 5.25e-02 | 1.91e-02 | 3.61e-02 |
| GO:0032318 | 15 | 0.200 | 0.333 | Up | 1.48e-02 | 5.25e-02 | 2.40e-03 | 9.98e-03 |
| GO:0051338 | 4 | 0.000 | 0.750 | Up | 1.50e-02 | 5.26e-02 | 1.98e-02 | 3.68e-02 |
| GO:0090501 | 4 | 0.250 | 0.500 | Down | 1.50e-02 | 5.26e-02 | 1.60e-03 | 8.44e-03 |
| GO:0006839 | 18 | 0.389 | 0.056 | Down | 1.50e-02 | 5.26e-02 | 1.49e-02 | 2.99e-02 |
| GO:0006643 | 15 | 0.067 | 0.600 | Up | 1.51e-02 | 5.28e-02 | 1.41e-02 | 2.86e-02 |
| GO:0051246 | 31 | 0.355 | 0.194 | Down | 1.52e-02 | 5.29e-02 | 4.30e-03 | 1.36e-02 |
| GO:1902531 | 17 | 0.294 | 0.294 | Down | 1.53e-02 | 5.31e-02 | 6.00e-04 | 5.76e-03 |
| GO:0044763 | 585 | 0.200 | 0.191 | Up | 1.55e-02 | 5.36e-02 | 5.00e-04 | 5.63e-03 |
| GO:0042455 | 22 | 0.227 | 0.318 | Up | 1.56e-02 | 5.36e-02 | 4.00e-04 | 5.11e-03 |
| GO:0006066 | 7 | 0.286 | 0.000 | Down | 1.58e-02 | 5.36e-02 | 4.48e-02 | 6.35e-02 |
| GO:0046474 | 16 | 0.062 | 0.500 | Up | 1.59e-02 | 5.36e-02 | 8.30e-03 | 1.97e-02 |
| GO:0010605 | 7 | 0.429 | 0.286 | Down | 1.59e-02 | 5.36e-02 | 1.20e-03 | 7.25e-03 |
| GO:1901605 | 24 | 0.167 | 0.167 | Down | 1.59e-02 | 5.36e-02 | 6.00e-03 | 1.60e-02 |
| GO:0006637 | 7 | 0.000 | 0.429 | Up | 1.60e-02 | 5.36e-02 | 1.80e-02 | 3.46e-02 |
| GO:0034654 | 128 | 0.211 | 0.188 | Down | 1.60e-02 | 5.36e-02 | 1.00e-03 | 6.73e-03 |
| GO:0018130 | 152 | 0.204 | 0.204 | Down | 1.60e-02 | 5.36e-02 | 7.00e-04 | 5.91e-03 |
| GO:0051716 | 109 | 0.174 | 0.156 | Up | 1.60e-02 | 5.36e-02 | 2.30e-03 | 9.98e-03 |
| GO:0006732 | 37 | 0.189 | 0.243 | Up | 1.62e-02 | 5.41e-02 | 5.00e-04 | 5.63e-03 |
| GO:0006812 | 42 | 0.214 | 0.262 | Up | 1.64e-02 | 5.41e-02 | 9.00e-04 | 6.35e-03 |
| GO:0007049 | 36 | 0.083 | 0.167 | Up | 1.64e-02 | 5.41e-02 | 2.02e-02 | 3.73e-02 |
| GO:0006506 | 9 | 0.000 | 0.667 | Up | 1.65e-02 | 5.41e-02 | 1.63e-02 | 3.20e-02 |
| GO:0005996 | 14 | 0.500 | 0.000 | Down | 1.66e-02 | 5.41e-02 | 1.92e-02 | 3.62e-02 |
| GO:0044272 | 14 | 0.071 | 0.357 | Up | 1.66e-02 | 5.41e-02 | 2.18e-02 | 3.95e-02 |
| GO:0046578 | 17 | 0.294 | 0.294 | Down | 1.66e-02 | 5.41e-02 | 3.00e-04 | 4.38e-03 |
| GO:0044767 | 11 | 0.000 | 0.273 | Up | 1.66e-02 | 5.41e-02 | 1.94e-02 | 3.64e-02 |
| GO:0044723 | 42 | 0.429 | 0.071 | Down | 1.68e-02 | 5.43e-02 | 7.90e-03 | 1.91e-02 |
| GO:0009142 | 10 | 0.200 | 0.500 | Up | 1.69e-02 | 5.43e-02 | 2.40e-03 | 9.98e-03 |
| GO:0032501 | 8 | 0.000 | 0.250 | Up | 1.69e-02 | 5.43e-02 | 4.02e-02 | 5.97e-02 |
| GO:0048518 | 11 | 0.364 | 0.091 | Down | 1.70e-02 | 5.43e-02 | 1.00e-02 | 2.25e-02 |
| GO:0009163 | 22 | 0.227 | 0.318 | Up | 1.70e-02 | 5.43e-02 | 4.00e-04 | 5.11e-03 |
| GO:0070647 | 29 | 0.310 | 0.172 | Down | 1.70e-02 | 5.43e-02 | 2.10e-03 | 9.45e-03 |
| GO:0071976 | 4 | 0.000 | 0.250 | Up | 1.72e-02 | 5.47e-02 | 5.74e-02 | 7.76e-02 |
| GO:0006897 | 7 | 0.286 | 0.143 | Down | 1.73e-02 | 5.47e-02 | 3.60e-03 | 1.24e-02 |
| GO:0009451 | 43 | 0.140 | 0.233 | Up | 1.73e-02 | 5.47e-02 | 7.00e-04 | 5.91e-03 |
| GO:0055065 | 4 | 0.250 | 0.750 | Up | 1.74e-02 | 5.47e-02 | 1.70e-03 | 8.55e-03 |
| GO:0009889 | 111 | 0.207 | 0.153 | Down | 1.74e-02 | 5.47e-02 | 5.50e-03 | 1.53e-02 |
| GO:0044281 | 231 | 0.242 | 0.169 | Down | 1.75e-02 | 5.48e-02 | 1.80e-03 | 8.79e-03 |
| GO:0009058 | 529 | 0.189 | 0.208 | Up | 1.77e-02 | 5.52e-02 | 1.20e-03 | 7.25e-03 |
| GO:0051056 | 17 | 0.294 | 0.294 | Down | 1.78e-02 | 5.54e-02 | 7.00e-04 | 5.91e-03 |
| GO:0046148 | 6 | 0.000 | 0.500 | Up | 1.81e-02 | 5.59e-02 | 4.96e-02 | 6.91e-02 |
| GO:0044249 | 516 | 0.186 | 0.205 | Up | 1.81e-02 | 5.59e-02 | 1.30e-03 | 7.67e-03 |
| GO:0031326 | 111 | 0.207 | 0.153 | Down | 1.82e-02 | 5.59e-02 | 6.50e-03 | 1.68e-02 |
| GO:1901362 | 155 | 0.200 | 0.200 | Down | 1.82e-02 | 5.59e-02 | 4.00e-04 | 5.11e-03 |
| GO:0006779 | 6 | 0.000 | 0.500 | Up | 1.84e-02 | 5.63e-02 | 4.70e-02 | 6.62e-02 |
| GO:0016042 | 5 | 0.200 | 0.400 | Up | 1.86e-02 | 5.65e-02 | 8.00e-04 | 6.08e-03 |
| GO:0032879 | 27 | 0.111 | 0.333 | Up | 1.86e-02 | 5.65e-02 | 2.00e-03 | 9.12e-03 |
| GO:0030001 | 16 | 0.188 | 0.312 | Up | 1.87e-02 | 5.65e-02 | 4.30e-03 | 1.36e-02 |
| GO:0045892 | 4 | 0.500 | 0.000 | Down | 1.88e-02 | 5.65e-02 | 2.88e-02 | 4.84e-02 |
| GO:0005975 | 53 | 0.377 | 0.094 | Down | 1.88e-02 | 5.65e-02 | 6.40e-03 | 1.67e-02 |
| GO:0072522 | 22 | 0.182 | 0.273 | Up | 1.88e-02 | 5.65e-02 | 1.70e-03 | 8.55e-03 |
| GO:0000350 | 3 | 0.667 | 0.333 | Down | 1.89e-02 | 5.66e-02 | 7.70e-03 | 1.87e-02 |
| GO:0006351 | 81 | 0.210 | 0.185 | Down | 1.92e-02 | 5.73e-02 | 1.80e-03 | 8.79e-03 |
| GO:2000112 | 110 | 0.209 | 0.155 | Down | 1.93e-02 | 5.74e-02 | 7.10e-03 | 1.79e-02 |
| GO:0051172 | 4 | 0.500 | 0.000 | Down | 1.94e-02 | 5.74e-02 | 2.68e-02 | 4.65e-02 |
| GO:0051049 | 27 | 0.111 | 0.333 | Up | 1.94e-02 | 5.74e-02 | 1.40e-03 | 7.93e-03 |
| GO:0032502 | 12 | 0.000 | 0.250 | Up | 1.95e-02 | 5.75e-02 | 2.43e-02 | 4.29e-02 |
| GO:0051128 | 22 | 0.091 | 0.273 | Up | 1.96e-02 | 5.75e-02 | 2.10e-03 | 9.45e-03 |
| GO:0019438 | 148 | 0.203 | 0.203 | Up | 1.96e-02 | 5.75e-02 | 7.00e-04 | 5.91e-03 |
| GO:0044802 | 14 | 0.214 | 0.143 | Down | 1.97e-02 | 5.76e-02 | 4.90e-03 | 1.46e-02 |
| GO:0033014 | 6 | 0.000 | 0.500 | Up | 1.99e-02 | 5.76e-02 | 5.12e-02 | 7.08e-02 |
| GO:0009056 | 171 | 0.304 | 0.140 | Down | 1.99e-02 | 5.76e-02 | 3.00e-03 | 1.12e-02 |
| GO:0006783 | 6 | 0.000 | 0.500 | Up | 2.00e-02 | 5.76e-02 | 4.84e-02 | 6.77e-02 |
| GO:0045934 | 4 | 0.500 | 0.000 | Down | 2.00e-02 | 5.76e-02 | 2.77e-02 | 4.73e-02 |
| GO:0010556 | 110 | 0.209 | 0.155 | Down | 2.00e-02 | 5.76e-02 | 5.50e-03 | 1.53e-02 |
| GO:1901659 | 23 | 0.217 | 0.304 | Up | 2.02e-02 | 5.80e-02 | 3.00e-04 | 4.38e-03 |
| GO:2000113 | 4 | 0.500 | 0.000 | Down | 2.05e-02 | 5.85e-02 | 2.85e-02 | 4.82e-02 |
| GO:0001510 | 9 | 0.222 | 0.333 | Up | 2.05e-02 | 5.85e-02 | 2.00e-04 | 3.08e-03 |
| GO:0051253 | 4 | 0.500 | 0.000 | Down | 2.06e-02 | 5.86e-02 | 2.60e-02 | 4.54e-02 |
| GO:0032784 | 3 | 0.667 | 0.000 | Down | 2.07e-02 | 5.87e-02 | 2.33e-02 | 4.15e-02 |
| GO:1902679 | 4 | 0.500 | 0.000 | Down | 2.08e-02 | 5.88e-02 | 2.81e-02 | 4.77e-02 |
| GO:0048583 | 27 | 0.259 | 0.222 | Down | 2.09e-02 | 5.89e-02 | 5.00e-04 | 5.63e-03 |
| GO:0045185 | 3 | 0.000 | 0.667 | Up | 2.10e-02 | 5.89e-02 | 1.64e-02 | 3.21e-02 |
| GO:0061024 | 17 | 0.235 | 0.118 | Down | 2.10e-02 | 5.89e-02 | 1.03e-02 | 2.27e-02 |
| GO:0042254 | 80 | 0.288 | 0.150 | Down | 2.12e-02 | 5.93e-02 | 4.10e-03 | 1.31e-02 |
| GO:1901576 | 518 | 0.189 | 0.203 | Up | 2.13e-02 | 5.94e-02 | 1.00e-03 | 6.73e-03 |
| GO:0006820 | 41 | 0.146 | 0.098 | Down | 2.15e-02 | 5.98e-02 | 2.94e-02 | 4.91e-02 |
| GO:0006904 | 4 | 0.500 | 0.250 | Down | 2.19e-02 | 6.07e-02 | 1.00e-04 | 1.34e-03 |
| GO:0009132 | 5 | 0.200 | 0.400 | Up | 2.22e-02 | 6.14e-02 | 9.00e-04 | 6.35e-03 |
| GO:0010558 | 4 | 0.500 | 0.000 | Down | 2.24e-02 | 6.17e-02 | 2.86e-02 | 4.83e-02 |
| GO:0022618 | 29 | 0.345 | 0.103 | Down | 2.26e-02 | 6.19e-02 | 1.36e-02 | 2.81e-02 |
| GO:1901575 | 165 | 0.303 | 0.145 | Down | 2.26e-02 | 6.19e-02 | 3.20e-03 | 1.16e-02 |
| GO:0007015 | 4 | 0.250 | 0.000 | Down | 2.29e-02 | 6.26e-02 | 2.97e-02 | 4.93e-02 |
| GO:0006661 | 10 | 0.000 | 0.600 | Up | 2.30e-02 | 6.27e-02 | 2.30e-02 | 4.11e-02 |
| GO:0006086 | 4 | 0.000 | 0.500 | Up | 2.31e-02 | 6.28e-02 | 3.27e-02 | 5.26e-02 |
| GO:0048278 | 4 | 0.500 | 0.250 | Down | 2.34e-02 | 6.32e-02 | 2.00e-04 | 3.08e-03 |
| GO:0031163 | 4 | 0.250 | 0.500 | Up | 2.34e-02 | 6.32e-02 | 3.80e-03 | 1.26e-02 |
| GO:0022406 | 4 | 0.500 | 0.250 | Down | 2.36e-02 | 6.36e-02 | 2.00e-04 | 3.08e-03 |
| GO:0006464 | 206 | 0.160 | 0.218 | Up | 2.38e-02 | 6.38e-02 | 1.40e-03 | 7.93e-03 |
| GO:0051235 | 3 | 0.000 | 0.667 | Up | 2.39e-02 | 6.38e-02 | 1.57e-02 | 3.12e-02 |
| GO:0016226 | 4 | 0.250 | 0.500 | Up | 2.40e-02 | 6.38e-02 | 3.60e-03 | 1.24e-02 |
| GO:0035384 | 4 | 0.000 | 0.500 | Up | 2.40e-02 | 6.38e-02 | 3.24e-02 | 5.26e-02 |
| GO:0009890 | 5 | 0.400 | 0.000 | Down | 2.40e-02 | 6.38e-02 | 3.22e-02 | 5.23e-02 |
| GO:0006508 | 138 | 0.268 | 0.181 | Down | 2.50e-02 | 6.61e-02 | 1.40e-03 | 7.93e-03 |
| GO:0035890 | 12 | 0.083 | 0.250 | Up | 2.50e-02 | 6.61e-02 | 5.84e-02 | 7.87e-02 |
| GO:0036211 | 206 | 0.160 | 0.218 | Up | 2.51e-02 | 6.62e-02 | 1.50e-03 | 8.22e-03 |
| GO:0044106 | 8 | 0.250 | 0.125 | Down | 2.53e-02 | 6.65e-02 | 1.28e-02 | 2.70e-02 |
| GO:0006357 | 10 | 0.300 | 0.100 | Down | 2.58e-02 | 6.73e-02 | 1.65e-02 | 3.22e-02 |
| GO:0006629 | 86 | 0.140 | 0.256 | Up | 2.58e-02 | 6.73e-02 | 4.50e-03 | 1.40e-02 |
| GO:0006869 | 9 | 0.222 | 0.222 | Down | 2.58e-02 | 6.73e-02 | 1.02e-02 | 2.26e-02 |
| GO:0032774 | 84 | 0.202 | 0.190 | Down | 2.60e-02 | 6.76e-02 | 1.50e-03 | 8.22e-03 |
| GO:0031327 | 5 | 0.400 | 0.000 | Down | 2.61e-02 | 6.76e-02 | 3.47e-02 | 5.40e-02 |
| GO:0019320 | 9 | 0.556 | 0.000 | Down | 2.62e-02 | 6.76e-02 | 2.72e-02 | 4.70e-02 |
| GO:0043248 | 8 | 0.625 | 0.125 | Down | 2.63e-02 | 6.76e-02 | 1.87e-02 | 3.57e-02 |
| GO:0006505 | 10 | 0.000 | 0.600 | Up | 2.63e-02 | 6.76e-02 | 2.55e-02 | 4.48e-02 |
| GO:0006085 | 4 | 0.000 | 0.500 | Up | 2.64e-02 | 6.76e-02 | 3.57e-02 | 5.50e-02 |
| GO:0018193 | 25 | 0.280 | 0.320 | Up | 2.64e-02 | 6.76e-02 | 3.00e-04 | 4.38e-03 |
| GO:0006098 | 9 | 0.556 | 0.000 | Down | 2.65e-02 | 6.76e-02 | 2.77e-02 | 4.73e-02 |
| GO:0009438 | 2 | 0.000 | 0.500 | Up | 2.66e-02 | 6.77e-02 | 5.00e-03 | 1.49e-02 |
| GO:0032268 | 27 | 0.259 | 0.222 | Down | 2.69e-02 | 6.81e-02 | 4.70e-03 | 1.42e-02 |
| GO:0042592 | 47 | 0.255 | 0.234 | Up | 2.69e-02 | 6.81e-02 | 1.10e-03 | 7.13e-03 |
| GO:0010876 | 9 | 0.222 | 0.222 | Down | 2.70e-02 | 6.82e-02 | 8.10e-03 | 1.94e-02 |
| GO:0070682 | 6 | 0.833 | 0.000 | Down | 2.71e-02 | 6.83e-02 | 2.72e-02 | 4.70e-02 |
| GO:0050657 | 7 | 0.286 | 0.143 | Down | 2.75e-02 | 6.91e-02 | 3.45e-02 | 5.40e-02 |
| GO:0034470 | 83 | 0.229 | 0.253 | Down | 2.76e-02 | 6.92e-02 | 1.70e-03 | 8.55e-03 |
| GO:0046365 | 9 | 0.556 | 0.000 | Down | 2.77e-02 | 6.92e-02 | 2.56e-02 | 4.48e-02 |
| GO:0044710 | 420 | 0.210 | 0.205 | Down | 2.78e-02 | 6.93e-02 | 1.00e-03 | 6.73e-03 |
| GO:0006165 | 2 | 0.500 | 0.500 | Up | 2.81e-02 | 6.99e-02 | 1.70e-03 | 8.55e-03 |
| GO:0050658 | 7 | 0.286 | 0.143 | Down | 2.82e-02 | 6.99e-02 | 3.27e-02 | 5.26e-02 |
| GO:0006740 | 9 | 0.556 | 0.000 | Down | 2.84e-02 | 7.02e-02 | 2.73e-02 | 4.70e-02 |
| GO:0046939 | 2 | 0.500 | 0.500 | Up | 2.86e-02 | 7.02e-02 | 2.30e-03 | 9.98e-03 |
| GO:0010564 | 17 | 0.118 | 0.235 | Up | 2.86e-02 | 7.02e-02 | 3.65e-02 | 5.59e-02 |
| GO:0051236 | 7 | 0.286 | 0.143 | Down | 2.87e-02 | 7.02e-02 | 3.50e-02 | 5.42e-02 |
| GO:0009308 | 8 | 0.250 | 0.125 | Down | 2.87e-02 | 7.02e-02 | 1.41e-02 | 2.86e-02 |
| GO:0051726 | 29 | 0.207 | 0.241 | Up | 2.88e-02 | 7.02e-02 | 6.10e-03 | 1.62e-02 |
| GO:0006739 | 9 | 0.556 | 0.000 | Down | 2.89e-02 | 7.02e-02 | 2.95e-02 | 4.91e-02 |
| GO:0006576 | 8 | 0.250 | 0.125 | Down | 2.89e-02 | 7.02e-02 | 1.37e-02 | 2.82e-02 |
| GO:0044711 | 147 | 0.184 | 0.231 | Up | 2.92e-02 | 7.08e-02 | 7.00e-04 | 5.91e-03 |
| GO:0032271 | 5 | 0.200 | 0.200 | Down | 2.93e-02 | 7.08e-02 | 6.85e-02 | 8.98e-02 |
| GO:0042777 | 1 | 0.000 | 1.000 | Up | 2.96e-02 | 7.10e-02 | 2.96e-02 | 4.92e-02 |
| GO:0006007 | 9 | 0.556 | 0.000 | Down | 2.96e-02 | 7.10e-02 | 2.87e-02 | 4.84e-02 |
| GO:0019362 | 10 | 0.500 | 0.000 | Down | 2.96e-02 | 7.10e-02 | 3.82e-02 | 5.75e-02 |
| GO:0006403 | 7 | 0.286 | 0.143 | Down | 2.97e-02 | 7.11e-02 | 3.88e-02 | 5.81e-02 |
| GO:0046496 | 10 | 0.500 | 0.000 | Down | 2.98e-02 | 7.12e-02 | 4.05e-02 | 5.98e-02 |
| GO:0044087 | 5 | 0.200 | 0.200 | Down | 2.99e-02 | 7.12e-02 | 6.70e-02 | 8.88e-02 |
| GO:0032956 | 5 | 0.200 | 0.200 | Down | 3.03e-02 | 7.19e-02 | 6.79e-02 | 8.93e-02 |
| GO:0008064 | 5 | 0.200 | 0.200 | Down | 3.04e-02 | 7.19e-02 | 6.39e-02 | 8.55e-02 |
| GO:0030832 | 5 | 0.200 | 0.200 | Down | 3.04e-02 | 7.19e-02 | 6.73e-02 | 8.90e-02 |
| GO:0006511 | 71 | 0.338 | 0.155 | Down | 3.05e-02 | 7.19e-02 | 3.90e-03 | 1.28e-02 |
| GO:0090407 | 64 | 0.172 | 0.250 | Up | 3.06e-02 | 7.20e-02 | 1.80e-03 | 8.79e-03 |
| GO:0071616 | 4 | 0.000 | 0.500 | Up | 3.08e-02 | 7.23e-02 | 4.03e-02 | 5.97e-02 |
| GO:0015718 | 7 | 0.286 | 0.143 | Down | 3.14e-02 | 7.35e-02 | 9.40e-03 | 2.15e-02 |
| GO:0006414 | 20 | 0.350 | 0.100 | Down | 3.17e-02 | 7.39e-02 | 1.48e-02 | 2.97e-02 |
| GO:0033036 | 161 | 0.193 | 0.130 | Down | 3.17e-02 | 7.39e-02 | 4.90e-03 | 1.46e-02 |
| GO:1901566 | 80 | 0.175 | 0.250 | Up | 3.18e-02 | 7.39e-02 | 4.00e-04 | 5.11e-03 |
| GO:0030833 | 5 | 0.200 | 0.200 | Down | 3.19e-02 | 7.40e-02 | 6.85e-02 | 8.98e-02 |
| GO:0043254 | 5 | 0.200 | 0.200 | Down | 3.21e-02 | 7.43e-02 | 6.87e-02 | 8.99e-02 |
| GO:0016482 | 66 | 0.227 | 0.091 | Down | 3.23e-02 | 7.45e-02 | 1.31e-02 | 2.76e-02 |
| GO:0006979 | 10 | 0.400 | 0.100 | Down | 3.27e-02 | 7.52e-02 | 2.73e-02 | 4.70e-02 |
| GO:0032970 | 5 | 0.200 | 0.200 | Down | 3.28e-02 | 7.52e-02 | 6.96e-02 | 9.07e-02 |
| GO:0007010 | 21 | 0.143 | 0.286 | Up | 3.29e-02 | 7.52e-02 | 5.10e-03 | 1.49e-02 |
| GO:0051493 | 5 | 0.200 | 0.200 | Down | 3.29e-02 | 7.52e-02 | 6.99e-02 | 9.09e-02 |
| GO:0032535 | 5 | 0.200 | 0.200 | Down | 3.30e-02 | 7.53e-02 | 7.45e-02 | 9.54e-02 |
| GO:0008654 | 25 | 0.160 | 0.360 | Up | 3.31e-02 | 7.53e-02 | 5.40e-03 | 1.52e-02 |
| GO:0051301 | 23 | 0.043 | 0.261 | Up | 3.33e-02 | 7.56e-02 | 2.44e-02 | 4.30e-02 |
| GO:0018208 | 10 | 0.400 | 0.100 | Down | 3.34e-02 | 7.56e-02 | 6.20e-03 | 1.65e-02 |
| GO:0000413 | 10 | 0.400 | 0.100 | Down | 3.36e-02 | 7.56e-02 | 5.20e-03 | 1.50e-02 |
| GO:0006890 | 6 | 0.000 | 0.333 | Up | 3.36e-02 | 7.56e-02 | 4.11e-02 | 6.03e-02 |
| GO:0006928 | 33 | 0.212 | 0.212 | Down | 3.36e-02 | 7.56e-02 | 2.20e-03 | 9.78e-03 |
| GO:0006644 | 35 | 0.200 | 0.314 | Up | 3.41e-02 | 7.63e-02 | 2.50e-03 | 1.02e-02 |
| GO:0009060 | 17 | 0.118 | 0.294 | Up | 3.41e-02 | 7.63e-02 | 1.98e-02 | 3.68e-02 |
| GO:0008535 | 1 | 0.000 | 1.000 | Up | 3.45e-02 | 7.69e-02 | 3.45e-02 | 5.40e-02 |
| GO:0035891 | 11 | 0.091 | 0.273 | Up | 3.45e-02 | 7.69e-02 | 6.58e-02 | 8.75e-02 |
| GO:0008610 | 53 | 0.132 | 0.283 | Up | 3.46e-02 | 7.69e-02 | 1.20e-02 | 2.58e-02 |
| GO:0090066 | 5 | 0.200 | 0.200 | Down | 3.47e-02 | 7.70e-02 | 7.00e-02 | 9.09e-02 |
| GO:0019219 | 110 | 0.200 | 0.191 | Down | 3.48e-02 | 7.70e-02 | 2.90e-03 | 1.09e-02 |
| GO:0051171 | 110 | 0.200 | 0.191 | Down | 3.55e-02 | 7.84e-02 | 2.80e-03 | 1.07e-02 |
| GO:0044257 | 76 | 0.329 | 0.171 | Down | 3.60e-02 | 7.93e-02 | 4.80e-03 | 1.44e-02 |
| GO:0006099 | 17 | 0.118 | 0.294 | Up | 3.61e-02 | 7.93e-02 | 1.89e-02 | 3.59e-02 |
| GO:0051603 | 76 | 0.329 | 0.171 | Down | 3.63e-02 | 7.96e-02 | 4.60e-03 | 1.41e-02 |
| GO:0043244 | 3 | 0.667 | 0.333 | Down | 3.64e-02 | 7.96e-02 | 1.25e-02 | 2.65e-02 |
| GO:0044255 | 73 | 0.151 | 0.260 | Up | 3.66e-02 | 7.99e-02 | 7.40e-03 | 1.82e-02 |
| GO:0006750 | 3 | 0.000 | 0.667 | Up | 3.68e-02 | 8.01e-02 | 3.91e-02 | 5.84e-02 |
| GO:0043632 | 73 | 0.329 | 0.164 | Down | 3.69e-02 | 8.02e-02 | 5.60e-03 | 1.54e-02 |
| GO:0009147 | 3 | 0.000 | 0.333 | Up | 3.72e-02 | 8.06e-02 | 5.28e-02 | 7.27e-02 |
| GO:0097354 | 6 | 0.000 | 0.167 | Up | 3.74e-02 | 8.06e-02 | 1.70e-01 | 1.99e-01 |
| GO:0043043 | 3 | 0.000 | 0.667 | Up | 3.75e-02 | 8.06e-02 | 3.96e-02 | 5.90e-02 |
| GO:0018205 | 6 | 0.333 | 0.500 | Up | 3.75e-02 | 8.06e-02 | 1.08e-02 | 2.35e-02 |
| GO:0031324 | 6 | 0.333 | 0.167 | Down | 3.75e-02 | 8.06e-02 | 1.40e-02 | 2.85e-02 |
| GO:0034645 | 383 | 0.193 | 0.196 | Down | 3.77e-02 | 8.08e-02 | 2.70e-03 | 1.05e-02 |
| GO:0019184 | 3 | 0.000 | 0.667 | Up | 3.84e-02 | 8.20e-02 | 3.60e-02 | 5.54e-02 |
| GO:0015672 | 24 | 0.208 | 0.292 | Up | 3.84e-02 | 8.20e-02 | 2.40e-03 | 9.98e-03 |
| GO:0019941 | 73 | 0.329 | 0.164 | Down | 3.94e-02 | 8.39e-02 | 5.80e-03 | 1.57e-02 |
| GO:0018342 | 6 | 0.000 | 0.167 | Up | 3.97e-02 | 8.44e-02 | 1.68e-01 | 1.98e-01 |
| GO:0016310 | 99 | 0.121 | 0.162 | Up | 4.00e-02 | 8.45e-02 | 8.10e-03 | 1.94e-02 |
| GO:0006468 | 91 | 0.099 | 0.154 | Up | 4.00e-02 | 8.45e-02 | 1.33e-02 | 2.77e-02 |
| GO:0007059 | 8 | 0.000 | 0.375 | Up | 4.01e-02 | 8.45e-02 | 4.93e-02 | 6.89e-02 |
| GO:0009059 | 385 | 0.192 | 0.197 | Down | 4.01e-02 | 8.45e-02 | 1.40e-03 | 7.93e-03 |
| GO:0016570 | 11 | 0.273 | 0.273 | Down | 4.02e-02 | 8.45e-02 | 4.40e-03 | 1.37e-02 |
| GO:0046486 | 25 | 0.160 | 0.320 | Up | 4.03e-02 | 8.45e-02 | 5.40e-03 | 1.52e-02 |
| GO:0043038 | 40 | 0.350 | 0.200 | Down | 4.04e-02 | 8.46e-02 | 5.40e-03 | 1.52e-02 |
| GO:0018344 | 3 | 0.000 | 0.333 | Up | 4.05e-02 | 8.46e-02 | 9.69e-02 | 1.19e-01 |
| GO:0006091 | 41 | 0.317 | 0.146 | Down | 4.06e-02 | 8.46e-02 | 3.60e-03 | 1.24e-02 |
| GO:0044265 | 97 | 0.299 | 0.165 | Down | 4.10e-02 | 8.51e-02 | 4.10e-03 | 1.31e-02 |
| GO:0006166 | 2 | 1.000 | 0.000 | Down | 4.11e-02 | 8.51e-02 | 4.11e-02 | 6.03e-02 |
| GO:0032787 | 53 | 0.264 | 0.151 | Down | 4.11e-02 | 8.51e-02 | 1.04e-02 | 2.28e-02 |
| GO:0032269 | 1 | 0.000 | 1.000 | Up | 4.14e-02 | 8.55e-02 | 4.14e-02 | 6.03e-02 |
| GO:0043039 | 40 | 0.350 | 0.200 | Down | 4.17e-02 | 8.58e-02 | 5.90e-03 | 1.59e-02 |
| GO:0016569 | 11 | 0.273 | 0.273 | Down | 4.17e-02 | 8.58e-02 | 5.40e-03 | 1.52e-02 |
| GO:0006415 | 5 | 0.000 | 0.400 | Up | 4.20e-02 | 8.62e-02 | 1.47e-01 | 1.74e-01 |
| GO:0008652 | 20 | 0.150 | 0.200 | Down | 4.21e-02 | 8.62e-02 | 1.76e-02 | 3.39e-02 |
| GO:0043101 | 2 | 1.000 | 0.000 | Down | 4.23e-02 | 8.63e-02 | 4.24e-02 | 6.12e-02 |
| GO:1902578 | 203 | 0.153 | 0.182 | Up | 4.23e-02 | 8.63e-02 | 4.90e-03 | 1.46e-02 |
| GO:0006084 | 5 | 0.000 | 0.400 | Up | 4.25e-02 | 8.65e-02 | 5.59e-02 | 7.60e-02 |
| GO:0043174 | 2 | 1.000 | 0.000 | Down | 4.29e-02 | 8.71e-02 | 4.30e-02 | 6.17e-02 |
| GO:0043624 | 5 | 0.000 | 0.400 | Up | 4.31e-02 | 8.74e-02 | 1.43e-01 | 1.69e-01 |
| GO:0051248 | 1 | 0.000 | 1.000 | Up | 4.33e-02 | 8.76e-02 | 4.33e-02 | 6.20e-02 |
| GO:0072524 | 12 | 0.417 | 0.000 | Down | 4.40e-02 | 8.83e-02 | 7.42e-02 | 9.52e-02 |
| GO:0071103 | 19 | 0.316 | 0.211 | Down | 4.40e-02 | 8.83e-02 | 9.10e-03 | 2.11e-02 |
| GO:0009057 | 101 | 0.287 | 0.158 | Down | 4.40e-02 | 8.83e-02 | 6.40e-03 | 1.67e-02 |
| GO:1901135 | 97 | 0.175 | 0.258 | Up | 4.40e-02 | 8.83e-02 | 1.40e-03 | 7.93e-03 |
| GO:1901070 | 2 | 0.000 | 0.500 | Up | 4.41e-02 | 8.83e-02 | 1.33e-02 | 2.77e-02 |
| GO:0043650 | 3 | 0.333 | 0.000 | Down | 4.46e-02 | 8.91e-02 | 5.81e-02 | 7.85e-02 |
| GO:0030154 | 7 | 0.000 | 0.286 | Up | 4.49e-02 | 8.95e-02 | 6.53e-02 | 8.71e-02 |
| GO:0002376 | 7 | 0.286 | 0.000 | Down | 4.52e-02 | 8.99e-02 | 2.04e-02 | 3.74e-02 |
| GO:0032984 | 8 | 0.000 | 0.375 | Up | 4.60e-02 | 9.13e-02 | 5.51e-02 | 7.53e-02 |
| GO:0006473 | 6 | 0.000 | 0.500 | Up | 4.61e-02 | 9.13e-02 | 1.16e-01 | 1.40e-01 |
| GO:0022411 | 8 | 0.000 | 0.375 | Up | 4.65e-02 | 9.19e-02 | 5.27e-02 | 7.27e-02 |
| GO:0006412 | 231 | 0.229 | 0.173 | Down | 4.71e-02 | 9.29e-02 | 4.20e-03 | 1.34e-02 |
| GO:0030163 | 86 | 0.302 | 0.174 | Down | 4.74e-02 | 9.33e-02 | 3.60e-03 | 1.24e-02 |
| GO:0043484 | 2 | 0.500 | 0.000 | Down | 4.76e-02 | 9.35e-02 | 9.06e-02 | 1.13e-01 |
| GO:0051130 | 3 | 0.333 | 0.000 | Down | 4.78e-02 | 9.37e-02 | 1.66e-01 | 1.95e-01 |
| GO:0009991 | 7 | 0.429 | 0.143 | Down | 4.81e-02 | 9.41e-02 | 1.93e-02 | 3.63e-02 |
| GO:0001522 | 17 | 0.059 | 0.176 | Up | 4.82e-02 | 9.41e-02 | 5.14e-02 | 7.10e-02 |
| GO:0031365 | 4 | 0.250 | 0.000 | Down | 4.84e-02 | 9.43e-02 | 6.92e-02 | 9.03e-02 |
| GO:0018345 | 8 | 0.000 | 0.500 | Up | 4.88e-02 | 9.47e-02 | 6.84e-02 | 8.98e-02 |
| GO:0040011 | 58 | 0.155 | 0.207 | Up | 4.88e-02 | 9.47e-02 | 3.80e-03 | 1.26e-02 |
| GO:0044765 | 199 | 0.156 | 0.176 | Up | 4.93e-02 | 9.53e-02 | 2.90e-03 | 1.09e-02 |
| GO:0006400 | 19 | 0.105 | 0.263 | Up | 4.94e-02 | 9.53e-02 | 3.10e-03 | 1.14e-02 |
| GO:0006420 | 3 | 0.000 | 0.667 | Up | 4.95e-02 | 9.53e-02 | 1.46e-01 | 1.72e-01 |
| GO:0051252 | 87 | 0.195 | 0.161 | Down | 4.95e-02 | 9.53e-02 | 1.02e-02 | 2.26e-02 |
| GO:0006749 | 4 | 0.250 | 0.500 | Up | 5.01e-02 | 9.61e-02 | 1.21e-02 | 2.59e-02 |
| GO:0006260 | 47 | 0.106 | 0.170 | Up | 5.01e-02 | 9.61e-02 | 1.96e-02 | 3.67e-02 |
| GO:0044248 | 137 | 0.255 | 0.161 | Down | 5.02e-02 | 9.61e-02 | 4.60e-03 | 1.41e-02 |
| GO:0046165 | 6 | 0.167 | 0.000 | Down | 5.08e-02 | 9.71e-02 | 7.95e-02 | 1.01e-01 |
| GO:0006793 | 226 | 0.159 | 0.186 | Up | 5.21e-02 | 9.93e-02 | 3.30e-03 | 1.17e-02 |
| GO:0009218 | 2 | 0.000 | 0.500 | Up | 5.34e-02 | 1.02e-01 | 1.84e-02 | 3.53e-02 |
| GO:0006275 | 3 | 0.000 | 0.333 | Up | 5.36e-02 | 1.02e-01 | 8.47e-02 | 1.07e-01 |
| GO:0051649 | 138 | 0.188 | 0.109 | Down | 5.37e-02 | 1.02e-01 | 5.60e-03 | 1.54e-02 |
| GO:0046131 | 2 | 0.000 | 0.500 | Up | 5.40e-02 | 1.02e-01 | 1.47e-02 | 2.96e-02 |
| GO:0051028 | 4 | 0.250 | 0.250 | Down | 5.41e-02 | 1.02e-01 | 3.28e-02 | 5.26e-02 |
| GO:0051641 | 142 | 0.183 | 0.120 | Down | 5.41e-02 | 1.02e-01 | 3.40e-03 | 1.20e-02 |
| GO:0030433 | 19 | 0.158 | 0.211 | Up | 5.44e-02 | 1.02e-01 | 2.68e-02 | 4.65e-02 |
| GO:0015748 | 6 | 0.167 | 0.167 | Down | 5.44e-02 | 1.02e-01 | 2.60e-03 | 1.05e-02 |
| GO:0055086 | 85 | 0.235 | 0.141 | Down | 5.46e-02 | 1.02e-01 | 3.60e-03 | 1.24e-02 |
| GO:0023051 | 21 | 0.238 | 0.286 | Up | 5.48e-02 | 1.02e-01 | 6.00e-04 | 5.76e-03 |
| GO:0006383 | 7 | 0.286 | 0.143 | Down | 5.50e-02 | 1.03e-01 | 6.50e-03 | 1.68e-02 |
| GO:0034982 | 2 | 0.500 | 0.000 | Down | 5.54e-02 | 1.03e-01 | 5.56e-02 | 7.58e-02 |
| GO:0052126 | 54 | 0.167 | 0.185 | Up | 5.55e-02 | 1.03e-01 | 3.70e-03 | 1.25e-02 |
| GO:0042273 | 16 | 0.250 | 0.125 | Down | 5.59e-02 | 1.04e-01 | 3.46e-02 | 5.40e-02 |
| GO:0009966 | 21 | 0.238 | 0.286 | Up | 5.60e-02 | 1.04e-01 | 7.00e-04 | 5.91e-03 |
| GO:0052192 | 54 | 0.167 | 0.185 | Up | 5.60e-02 | 1.04e-01 | 3.60e-03 | 1.24e-02 |
| GO:0033013 | 8 | 0.000 | 0.375 | Up | 5.63e-02 | 1.04e-01 | 7.93e-02 | 1.01e-01 |
| GO:0010646 | 21 | 0.238 | 0.286 | Up | 5.65e-02 | 1.04e-01 | 7.00e-04 | 5.91e-03 |
| GO:0046134 | 2 | 0.000 | 0.500 | Up | 5.69e-02 | 1.05e-01 | 1.88e-02 | 3.58e-02 |
| GO:0009220 | 2 | 0.000 | 0.500 | Up | 5.73e-02 | 1.05e-01 | 1.67e-02 | 3.24e-02 |
| GO:0006367 | 8 | 0.000 | 0.375 | Up | 5.75e-02 | 1.05e-01 | 3.56e-02 | 5.50e-02 |
| GO:0020027 | 7 | 0.143 | 0.286 | Up | 5.80e-02 | 1.06e-01 | 1.02e-02 | 2.26e-02 |
| GO:0006388 | 2 | 0.000 | 0.500 | Up | 5.81e-02 | 1.06e-01 | 6.74e-02 | 8.91e-02 |
| GO:0031325 | 4 | 0.500 | 0.250 | Down | 5.82e-02 | 1.06e-01 | 1.32e-02 | 2.77e-02 |
| GO:0000394 | 2 | 0.000 | 0.500 | Up | 5.84e-02 | 1.06e-01 | 7.50e-02 | 9.58e-02 |
| GO:0046132 | 2 | 0.000 | 0.500 | Up | 5.85e-02 | 1.06e-01 | 1.51e-02 | 3.02e-02 |
| GO:0010604 | 4 | 0.500 | 0.250 | Down | 5.88e-02 | 1.06e-01 | 1.61e-02 | 3.18e-02 |
| GO:0042168 | 8 | 0.000 | 0.375 | Up | 5.89e-02 | 1.06e-01 | 8.63e-02 | 1.08e-01 |
| GO:0006656 | 4 | 0.250 | 0.000 | Down | 5.89e-02 | 1.06e-01 | 3.80e-02 | 5.74e-02 |
| GO:1902589 | 44 | 0.182 | 0.159 | Down | 5.89e-02 | 1.06e-01 | 3.30e-03 | 1.17e-02 |
| GO:0008104 | 148 | 0.189 | 0.128 | Down | 5.91e-02 | 1.06e-01 | 6.60e-03 | 1.70e-02 |
| GO:0006213 | 2 | 0.000 | 0.500 | Up | 5.97e-02 | 1.07e-01 | 1.67e-02 | 3.24e-02 |
| GO:0009127 | 11 | 0.091 | 0.364 | Up | 5.97e-02 | 1.07e-01 | 5.09e-02 | 7.05e-02 |
| GO:0015980 | 24 | 0.125 | 0.250 | Up | 5.97e-02 | 1.07e-01 | 3.04e-02 | 5.00e-02 |
| GO:0006650 | 24 | 0.167 | 0.333 | Up | 5.99e-02 | 1.07e-01 | 5.50e-03 | 1.53e-02 |
| GO:0042594 | 3 | 0.667 | 0.000 | Down | 6.02e-02 | 1.07e-01 | 4.43e-02 | 6.30e-02 |
| GO:0042440 | 8 | 0.000 | 0.375 | Up | 6.02e-02 | 1.07e-01 | 8.44e-02 | 1.07e-01 |
| GO:0006811 | 79 | 0.177 | 0.190 | Down | 6.08e-02 | 1.08e-01 | 2.80e-03 | 1.07e-02 |
| GO:0042439 | 4 | 0.250 | 0.000 | Down | 6.10e-02 | 1.08e-01 | 3.67e-02 | 5.61e-02 |
| GO:0046470 | 4 | 0.250 | 0.000 | Down | 6.13e-02 | 1.08e-01 | 3.22e-02 | 5.23e-02 |
| GO:0031668 | 5 | 0.400 | 0.000 | Down | 6.15e-02 | 1.08e-01 | 1.15e-01 | 1.39e-01 |
| GO:0043094 | 3 | 0.667 | 0.000 | Down | 6.18e-02 | 1.09e-01 | 9.20e-02 | 1.14e-01 |
| GO:0051806 | 42 | 0.167 | 0.214 | Up | 6.22e-02 | 1.09e-01 | 2.00e-03 | 9.12e-03 |
| GO:0046395 | 7 | 0.143 | 0.429 | Up | 6.23e-02 | 1.09e-01 | 6.22e-02 | 8.34e-02 |
| GO:0016054 | 7 | 0.143 | 0.429 | Up | 6.27e-02 | 1.10e-01 | 6.67e-02 | 8.86e-02 |
| GO:0009168 | 11 | 0.091 | 0.364 | Up | 6.30e-02 | 1.10e-01 | 5.58e-02 | 7.60e-02 |
| GO:0022402 | 21 | 0.095 | 0.190 | Up | 6.30e-02 | 1.10e-01 | 5.60e-02 | 7.60e-02 |
| GO:0006778 | 8 | 0.000 | 0.375 | Up | 6.31e-02 | 1.10e-01 | 8.50e-02 | 1.07e-01 |
| GO:0045333 | 23 | 0.130 | 0.261 | Up | 6.32e-02 | 1.10e-01 | 2.89e-02 | 4.85e-02 |
| GO:0048869 | 8 | 0.000 | 0.250 | Up | 6.33e-02 | 1.10e-01 | 7.71e-02 | 9.81e-02 |
| GO:0071702 | 174 | 0.178 | 0.126 | Down | 6.34e-02 | 1.10e-01 | 9.30e-03 | 2.14e-02 |
| GO:0034033 | 4 | 0.000 | 0.250 | Up | 6.36e-02 | 1.10e-01 | 4.24e-02 | 6.12e-02 |
| GO:0030260 | 42 | 0.167 | 0.214 | Up | 6.37e-02 | 1.10e-01 | 2.70e-03 | 1.05e-02 |
| GO:0017038 | 19 | 0.263 | 0.053 | Down | 6.44e-02 | 1.10e-01 | 5.37e-02 | 7.37e-02 |
| GO:2001141 | 85 | 0.188 | 0.165 | Down | 6.46e-02 | 1.10e-01 | 9.70e-03 | 2.20e-02 |
| GO:0042540 | 7 | 0.143 | 0.286 | Up | 6.47e-02 | 1.10e-01 | 1.23e-02 | 2.62e-02 |
| GO:0034030 | 4 | 0.000 | 0.250 | Up | 6.47e-02 | 1.10e-01 | 4.15e-02 | 6.03e-02 |
| GO:0015936 | 4 | 0.000 | 0.250 | Up | 6.49e-02 | 1.10e-01 | 4.08e-02 | 6.02e-02 |
| GO:0030488 | 4 | 0.000 | 0.250 | Up | 6.49e-02 | 1.10e-01 | 5.00e-02 | 6.94e-02 |
| GO:0046907 | 134 | 0.179 | 0.112 | Down | 6.49e-02 | 1.10e-01 | 5.90e-03 | 1.59e-02 |
| GO:0051179 | 346 | 0.171 | 0.159 | Up | 6.49e-02 | 1.10e-01 | 4.00e-03 | 1.30e-02 |
| GO:0015711 | 18 | 0.167 | 0.111 | Down | 6.50e-02 | 1.10e-01 | 9.90e-03 | 2.23e-02 |
| GO:0045184 | 143 | 0.189 | 0.119 | Down | 6.51e-02 | 1.10e-01 | 8.40e-03 | 1.99e-02 |
| GO:0006418 | 38 | 0.342 | 0.211 | Down | 6.56e-02 | 1.11e-01 | 7.00e-03 | 1.77e-02 |
| GO:0009893 | 4 | 0.500 | 0.250 | Down | 6.58e-02 | 1.11e-01 | 1.63e-02 | 3.20e-02 |
| GO:0033866 | 4 | 0.000 | 0.250 | Up | 6.59e-02 | 1.11e-01 | 4.13e-02 | 6.03e-02 |
| GO:0033875 | 4 | 0.000 | 0.250 | Up | 6.60e-02 | 1.11e-01 | 4.14e-02 | 6.03e-02 |
| GO:0072528 | 14 | 0.286 | 0.143 | Down | 6.61e-02 | 1.11e-01 | 1.10e-03 | 7.13e-03 |
| GO:0044282 | 7 | 0.143 | 0.429 | Up | 6.63e-02 | 1.11e-01 | 6.54e-02 | 8.71e-02 |
| GO:0016311 | 15 | 0.200 | 0.267 | Down | 6.63e-02 | 1.11e-01 | 6.90e-03 | 1.76e-02 |
| GO:0015031 | 142 | 0.190 | 0.120 | Down | 6.63e-02 | 1.11e-01 | 7.30e-03 | 1.80e-02 |
| GO:0034032 | 4 | 0.000 | 0.250 | Up | 6.72e-02 | 1.12e-01 | 3.80e-02 | 5.74e-02 |
| GO:0033865 | 4 | 0.000 | 0.250 | Up | 6.73e-02 | 1.12e-01 | 4.39e-02 | 6.26e-02 |
| GO:0055085 | 69 | 0.174 | 0.188 | Up | 6.74e-02 | 1.12e-01 | 5.70e-03 | 1.55e-02 |
| GO:0006355 | 85 | 0.188 | 0.165 | Down | 6.78e-02 | 1.13e-01 | 1.20e-02 | 2.58e-02 |
| GO:0009148 | 2 | 0.000 | 0.500 | Up | 6.80e-02 | 1.13e-01 | 4.49e-02 | 6.36e-02 |
| GO:0044409 | 46 | 0.174 | 0.196 | Up | 6.82e-02 | 1.13e-01 | 2.70e-03 | 1.05e-02 |
| GO:0030522 | 2 | 0.500 | 0.000 | Down | 6.87e-02 | 1.14e-01 | 1.96e-02 | 3.67e-02 |
| GO:0006733 | 15 | 0.333 | 0.133 | Down | 6.97e-02 | 1.15e-01 | 2.17e-02 | 3.94e-02 |
| GO:0002682 | 6 | 0.333 | 0.000 | Down | 6.98e-02 | 1.15e-01 | 2.45e-02 | 4.31e-02 |
| GO:0046916 | 3 | 0.333 | 0.667 | Up | 6.99e-02 | 1.15e-01 | 4.70e-03 | 1.42e-02 |
| GO:0015937 | 4 | 0.000 | 0.250 | Up | 6.99e-02 | 1.15e-01 | 4.53e-02 | 6.40e-02 |
| GO:0060627 | 23 | 0.087 | 0.261 | Up | 7.06e-02 | 1.15e-01 | 3.10e-03 | 1.14e-02 |
| GO:0019637 | 115 | 0.217 | 0.191 | Down | 7.06e-02 | 1.15e-01 | 1.80e-03 | 8.79e-03 |
| GO:0015693 | 1 | 0.000 | 1.000 | Up | 7.09e-02 | 1.16e-01 | 7.09e-02 | 9.19e-02 |
| GO:0071496 | 5 | 0.400 | 0.000 | Down | 7.10e-02 | 1.16e-01 | 1.16e-01 | 1.40e-01 |
| GO:0017004 | 2 | 0.500 | 0.500 | Up | 7.11e-02 | 1.16e-01 | 2.99e-02 | 4.94e-02 |
| GO:0000393 | 5 | 0.400 | 0.400 | Down | 7.12e-02 | 1.16e-01 | 7.80e-03 | 1.89e-02 |
| GO:0006887 | 5 | 0.400 | 0.200 | Down | 7.15e-02 | 1.16e-01 | 4.00e-04 | 5.11e-03 |
| GO:0071822 | 51 | 0.235 | 0.196 | Down | 7.15e-02 | 1.16e-01 | 3.80e-03 | 1.26e-02 |
| GO:0042180 | 6 | 0.000 | 0.333 | Up | 7.19e-02 | 1.16e-01 | 6.75e-02 | 8.91e-02 |
| GO:0009150 | 40 | 0.150 | 0.250 | Up | 7.21e-02 | 1.16e-01 | 3.10e-03 | 1.14e-02 |
| GO:0051828 | 46 | 0.174 | 0.196 | Up | 7.29e-02 | 1.17e-01 | 1.80e-03 | 8.79e-03 |
| GO:0046903 | 5 | 0.400 | 0.200 | Down | 7.37e-02 | 1.19e-01 | 3.00e-04 | 4.38e-03 |
| GO:0050776 | 6 | 0.333 | 0.000 | Down | 7.43e-02 | 1.19e-01 | 2.24e-02 | 4.03e-02 |
| GO:0055076 | 3 | 0.333 | 0.667 | Up | 7.49e-02 | 1.20e-01 | 5.20e-03 | 1.50e-02 |
| GO:0032940 | 5 | 0.400 | 0.200 | Down | 7.50e-02 | 1.20e-01 | 3.00e-04 | 4.38e-03 |
| GO:0042181 | 6 | 0.000 | 0.333 | Up | 7.52e-02 | 1.20e-01 | 7.17e-02 | 9.26e-02 |
| GO:0006886 | 102 | 0.196 | 0.108 | Down | 7.59e-02 | 1.21e-01 | 9.10e-03 | 2.11e-02 |
| GO:0034613 | 106 | 0.189 | 0.123 | Down | 7.69e-02 | 1.22e-01 | 6.80e-03 | 1.74e-02 |
| GO:0051234 | 333 | 0.171 | 0.150 | Up | 7.70e-02 | 1.22e-01 | 3.60e-03 | 1.24e-02 |
| GO:0070727 | 106 | 0.189 | 0.123 | Down | 7.76e-02 | 1.23e-01 | 7.20e-03 | 1.79e-02 |
| GO:1901661 | 6 | 0.000 | 0.333 | Up | 7.82e-02 | 1.24e-01 | 7.72e-02 | 9.81e-02 |
| GO:0006796 | 219 | 0.164 | 0.178 | Up | 7.83e-02 | 1.24e-01 | 3.20e-03 | 1.16e-02 |
| GO:0006810 | 332 | 0.172 | 0.151 | Up | 7.89e-02 | 1.25e-01 | 3.90e-03 | 1.28e-02 |
| GO:0006487 | 2 | 0.000 | 0.500 | Up | 7.97e-02 | 1.26e-01 | 1.72e-01 | 2.02e-01 |
| GO:0017183 | 5 | 0.200 | 0.400 | Up | 8.07e-02 | 1.27e-01 | 1.64e-02 | 3.21e-02 |
| GO:0007017 | 31 | 0.194 | 0.194 | Up | 8.08e-02 | 1.27e-01 | 3.20e-03 | 1.16e-02 |
| GO:0009124 | 12 | 0.083 | 0.333 | Up | 8.12e-02 | 1.27e-01 | 5.82e-02 | 7.85e-02 |
| GO:1901663 | 6 | 0.000 | 0.333 | Up | 8.16e-02 | 1.28e-01 | 7.55e-02 | 9.63e-02 |
| GO:0048870 | 10 | 0.100 | 0.300 | Up | 8.19e-02 | 1.28e-01 | 4.98e-02 | 6.92e-02 |
| GO:0055114 | 95 | 0.211 | 0.221 | Up | 8.21e-02 | 1.28e-01 | 1.00e-03 | 6.73e-03 |
| GO:0006873 | 11 | 0.091 | 0.364 | Up | 8.22e-02 | 1.28e-01 | 1.41e-02 | 2.86e-02 |
| GO:0030003 | 11 | 0.091 | 0.364 | Up | 8.28e-02 | 1.29e-01 | 1.40e-02 | 2.85e-02 |
| GO:0009156 | 12 | 0.083 | 0.333 | Up | 8.41e-02 | 1.31e-01 | 6.08e-02 | 8.18e-02 |
| GO:0009259 | 41 | 0.146 | 0.244 | Up | 8.42e-02 | 1.31e-01 | 4.00e-03 | 1.30e-02 |
| GO:0046034 | 12 | 0.167 | 0.417 | Up | 8.45e-02 | 1.31e-01 | 2.94e-02 | 4.91e-02 |
| GO:0051674 | 10 | 0.100 | 0.300 | Up | 8.57e-02 | 1.32e-01 | 5.30e-02 | 7.29e-02 |
| GO:0017182 | 5 | 0.200 | 0.400 | Up | 8.58e-02 | 1.32e-01 | 1.58e-02 | 3.14e-02 |
| GO:0007186 | 4 | 0.000 | 0.250 | Up | 8.74e-02 | 1.35e-01 | 1.75e-01 | 2.05e-01 |
| GO:0006366 | 21 | 0.143 | 0.238 | Up | 8.77e-02 | 1.35e-01 | 1.46e-02 | 2.95e-02 |
| GO:0031667 | 4 | 0.500 | 0.250 | Down | 8.82e-02 | 1.36e-01 | 7.20e-03 | 1.79e-02 |
| GO:0019693 | 42 | 0.143 | 0.238 | Up | 8.86e-02 | 1.36e-01 | 4.30e-03 | 1.36e-02 |
| GO:0015988 | 14 | 0.214 | 0.357 | Up | 8.88e-02 | 1.36e-01 | 3.30e-03 | 1.17e-02 |
| GO:0034227 | 3 | 0.000 | 0.333 | Up | 8.95e-02 | 1.37e-01 | 1.36e-01 | 1.61e-01 |
| GO:0015991 | 14 | 0.214 | 0.357 | Up | 9.03e-02 | 1.38e-01 | 2.80e-03 | 1.07e-02 |
| GO:0006826 | 3 | 0.333 | 0.000 | Down | 9.06e-02 | 1.38e-01 | 6.88e-02 | 8.99e-02 |
| GO:0046488 | 18 | 0.167 | 0.333 | Up | 9.07e-02 | 1.38e-01 | 1.05e-02 | 2.30e-02 |
| GO:0098655 | 17 | 0.176 | 0.294 | Up | 9.15e-02 | 1.39e-01 | 8.90e-03 | 2.09e-02 |
| GO:1901657 | 48 | 0.208 | 0.229 | Down | 9.18e-02 | 1.39e-01 | 1.10e-03 | 7.13e-03 |
| GO:0048878 | 14 | 0.143 | 0.357 | Up | 9.21e-02 | 1.40e-01 | 5.40e-03 | 1.52e-02 |
| GO:0015684 | 3 | 0.333 | 0.000 | Down | 9.29e-02 | 1.40e-01 | 7.17e-02 | 9.26e-02 |
| GO:0030150 | 3 | 0.667 | 0.000 | Down | 9.38e-02 | 1.42e-01 | 4.28e-02 | 6.16e-02 |
| GO:0009199 | 30 | 0.167 | 0.300 | Up | 9.55e-02 | 1.44e-01 | 2.40e-03 | 9.98e-03 |
| GO:0034220 | 19 | 0.211 | 0.263 | Up | 9.56e-02 | 1.44e-01 | 6.00e-04 | 5.76e-03 |
| GO:0098660 | 17 | 0.176 | 0.294 | Up | 9.69e-02 | 1.46e-01 | 1.03e-02 | 2.27e-02 |
| GO:0070271 | 42 | 0.262 | 0.190 | Down | 9.71e-02 | 1.46e-01 | 5.60e-03 | 1.54e-02 |
| GO:0051259 | 6 | 0.167 | 0.167 | Up | 9.72e-02 | 1.46e-01 | 2.66e-02 | 4.64e-02 |
| GO:0098662 | 17 | 0.176 | 0.294 | Up | 9.76e-02 | 1.46e-01 | 1.02e-02 | 2.26e-02 |
| GO:0006461 | 42 | 0.262 | 0.190 | Down | 9.80e-02 | 1.46e-01 | 5.40e-03 | 1.52e-02 |
| GO:0006817 | 22 | 0.136 | 0.045 | Down | 9.96e-02 | 1.49e-01 | 2.61e-01 | 2.92e-01 |
| GO:0006334 | 6 | 0.333 | 0.333 | Down | 9.99e-02 | 1.49e-01 | 2.04e-02 | 3.74e-02 |
| GO:0009205 | 30 | 0.167 | 0.300 | Up | 9.99e-02 | 1.49e-01 | 2.50e-03 | 1.02e-02 |
| GO:0030258 | 4 | 0.250 | 0.250 | Down | 1.00e-01 | 1.49e-01 | 6.39e-02 | 8.55e-02 |
| GO:0034728 | 6 | 0.333 | 0.333 | Down | 1.01e-01 | 1.49e-01 | 2.19e-02 | 3.96e-02 |
| GO:0000278 | 13 | 0.000 | 0.154 | Up | 1.01e-01 | 1.49e-01 | 2.46e-01 | 2.76e-01 |
| GO:0006665 | 2 | 0.000 | 1.000 | Up | 1.01e-01 | 1.50e-01 | 1.03e-01 | 1.27e-01 |
| GO:0044283 | 59 | 0.119 | 0.186 | Up | 1.02e-01 | 1.51e-01 | 1.24e-02 | 2.64e-02 |
| GO:1901615 | 13 | 0.154 | 0.000 | Down | 1.04e-01 | 1.53e-01 | 2.31e-01 | 2.61e-01 |
| GO:0071705 | 16 | 0.188 | 0.125 | Down | 1.05e-01 | 1.54e-01 | 2.40e-02 | 4.25e-02 |
| GO:0071824 | 11 | 0.273 | 0.182 | Down | 1.05e-01 | 1.54e-01 | 4.30e-02 | 6.17e-02 |
| GO:0007166 | 8 | 0.125 | 0.125 | Up | 1.05e-01 | 1.54e-01 | 3.64e-02 | 5.58e-02 |
| GO:0065004 | 11 | 0.273 | 0.182 | Down | 1.05e-01 | 1.54e-01 | 4.35e-02 | 6.22e-02 |
| GO:0009116 | 47 | 0.213 | 0.234 | Down | 1.06e-01 | 1.54e-01 | 1.60e-03 | 8.44e-03 |
| GO:0009117 | 71 | 0.211 | 0.155 | Down | 1.06e-01 | 1.54e-01 | 3.80e-03 | 1.26e-02 |
| GO:0006825 | 3 | 0.000 | 0.333 | Up | 1.06e-01 | 1.54e-01 | 1.13e-01 | 1.38e-01 |
| GO:0010256 | 4 | 0.000 | 0.250 | Up | 1.06e-01 | 1.54e-01 | 1.89e-01 | 2.19e-01 |
| GO:0006310 | 18 | 0.167 | 0.111 | Down | 1.06e-01 | 1.54e-01 | 1.98e-02 | 3.68e-02 |
| GO:0006220 | 8 | 0.250 | 0.125 | Up | 1.07e-01 | 1.55e-01 | 3.18e-02 | 5.20e-02 |
| GO:0015074 | 3 | 0.333 | 0.000 | Down | 1.08e-01 | 1.56e-01 | 1.20e-01 | 1.44e-01 |
| GO:0009165 | 36 | 0.194 | 0.194 | Up | 1.08e-01 | 1.56e-01 | 2.20e-03 | 9.78e-03 |
| GO:0006376 | 3 | 0.333 | 0.333 | Down | 1.08e-01 | 1.56e-01 | 3.31e-02 | 5.28e-02 |
| GO:0000003 | 3 | 0.333 | 0.000 | Down | 1.08e-01 | 1.56e-01 | 1.72e-01 | 2.02e-01 |
| GO:0032483 | 13 | 0.231 | 0.231 | Down | 1.09e-01 | 1.57e-01 | 8.00e-03 | 1.93e-02 |
| GO:0072527 | 15 | 0.267 | 0.133 | Up | 1.09e-01 | 1.57e-01 | 2.70e-03 | 1.05e-02 |
| GO:0055082 | 12 | 0.083 | 0.333 | Up | 1.09e-01 | 1.57e-01 | 1.68e-02 | 3.25e-02 |
| GO:0032313 | 13 | 0.231 | 0.231 | Down | 1.09e-01 | 1.57e-01 | 9.00e-03 | 2.10e-02 |
| GO:1901293 | 37 | 0.189 | 0.189 | Up | 1.11e-01 | 1.58e-01 | 3.00e-03 | 1.12e-02 |
| GO:0015698 | 23 | 0.130 | 0.087 | Down | 1.11e-01 | 1.59e-01 | 2.14e-01 | 2.43e-01 |
| GO:0050801 | 12 | 0.167 | 0.333 | Up | 1.12e-01 | 1.60e-01 | 4.70e-03 | 1.42e-02 |
| GO:0055080 | 12 | 0.167 | 0.333 | Up | 1.13e-01 | 1.60e-01 | 5.10e-03 | 1.49e-02 |
| GO:1901565 | 31 | 0.161 | 0.161 | Down | 1.13e-01 | 1.61e-01 | 3.31e-02 | 5.28e-02 |
| GO:0016192 | 83 | 0.145 | 0.157 | Up | 1.13e-01 | 1.61e-01 | 9.20e-03 | 2.13e-02 |
| GO:1902600 | 16 | 0.188 | 0.312 | Up | 1.14e-01 | 1.61e-01 | 8.50e-03 | 2.01e-02 |
| GO:0010498 | 21 | 0.190 | 0.190 | Up | 1.14e-01 | 1.62e-01 | 3.04e-02 | 5.00e-02 |
| GO:0006766 | 8 | 0.125 | 0.250 | Up | 1.16e-01 | 1.64e-01 | 3.44e-02 | 5.40e-02 |
| GO:0043161 | 21 | 0.190 | 0.190 | Up | 1.17e-01 | 1.65e-01 | 3.32e-02 | 5.28e-02 |
| GO:0007154 | 59 | 0.169 | 0.102 | Down | 1.19e-01 | 1.68e-01 | 1.26e-02 | 2.66e-02 |
| GO:0006352 | 14 | 0.071 | 0.286 | Up | 1.20e-01 | 1.68e-01 | 3.12e-02 | 5.12e-02 |
| GO:0045047 | 7 | 0.143 | 0.143 | Down | 1.20e-01 | 1.68e-01 | 4.78e-02 | 6.70e-02 |
| GO:0006163 | 43 | 0.163 | 0.233 | Up | 1.20e-01 | 1.68e-01 | 2.60e-03 | 1.05e-02 |
| GO:0009144 | 31 | 0.194 | 0.290 | Up | 1.20e-01 | 1.69e-01 | 2.10e-03 | 9.45e-03 |
| GO:0072599 | 7 | 0.143 | 0.143 | Down | 1.22e-01 | 1.71e-01 | 4.72e-02 | 6.63e-02 |
| GO:0006612 | 7 | 0.143 | 0.143 | Down | 1.22e-01 | 1.71e-01 | 4.74e-02 | 6.65e-02 |
| GO:1903047 | 12 | 0.000 | 0.167 | Up | 1.23e-01 | 1.71e-01 | 2.82e-01 | 3.13e-01 |
| GO:0051260 | 3 | 0.333 | 0.000 | Down | 1.23e-01 | 1.72e-01 | 2.19e-01 | 2.49e-01 |
| GO:0042364 | 8 | 0.125 | 0.250 | Up | 1.25e-01 | 1.74e-01 | 3.80e-02 | 5.74e-02 |
| GO:0043623 | 26 | 0.308 | 0.192 | Down | 1.26e-01 | 1.75e-01 | 7.20e-03 | 1.79e-02 |
| GO:0009262 | 7 | 0.143 | 0.143 | Up | 1.26e-01 | 1.75e-01 | 2.99e-02 | 4.94e-02 |
| GO:0006767 | 8 | 0.125 | 0.250 | Up | 1.26e-01 | 1.75e-01 | 3.92e-02 | 5.85e-02 |
| GO:0008295 | 3 | 0.000 | 0.333 | Up | 1.28e-01 | 1.77e-01 | 7.18e-02 | 9.26e-02 |
| GO:0009110 | 8 | 0.125 | 0.250 | Up | 1.28e-01 | 1.78e-01 | 4.12e-02 | 6.03e-02 |
| GO:0042401 | 3 | 0.000 | 0.333 | Up | 1.32e-01 | 1.82e-01 | 7.33e-02 | 9.43e-02 |
| GO:1902582 | 80 | 0.162 | 0.125 | Down | 1.32e-01 | 1.82e-01 | 1.67e-02 | 3.24e-02 |
| GO:0006753 | 73 | 0.205 | 0.151 | Down | 1.32e-01 | 1.82e-01 | 4.80e-03 | 1.44e-02 |
| GO:0006596 | 3 | 0.000 | 0.333 | Up | 1.32e-01 | 1.82e-01 | 7.58e-02 | 9.66e-02 |
| GO:0006261 | 27 | 0.148 | 0.222 | Up | 1.33e-01 | 1.82e-01 | 3.46e-02 | 5.40e-02 |
| GO:0016567 | 11 | 0.182 | 0.182 | Down | 1.33e-01 | 1.82e-01 | 2.15e-02 | 3.91e-02 |
| GO:0019751 | 3 | 0.333 | 0.000 | Down | 1.34e-01 | 1.83e-01 | 2.41e-01 | 2.70e-01 |
| GO:0006744 | 5 | 0.000 | 0.400 | Up | 1.34e-01 | 1.84e-01 | 9.56e-02 | 1.18e-01 |
| GO:0009309 | 3 | 0.000 | 0.333 | Up | 1.35e-01 | 1.84e-01 | 7.33e-02 | 9.43e-02 |
| GO:0006743 | 5 | 0.000 | 0.400 | Up | 1.37e-01 | 1.87e-01 | 1.05e-01 | 1.28e-01 |
| GO:0009119 | 46 | 0.196 | 0.239 | Down | 1.37e-01 | 1.87e-01 | 1.50e-03 | 8.22e-03 |
| GO:0051258 | 8 | 0.000 | 0.250 | Up | 1.37e-01 | 1.87e-01 | 2.69e-01 | 3.01e-01 |
| GO:0006536 | 5 | 0.200 | 0.000 | Down | 1.39e-01 | 1.88e-01 | 9.63e-02 | 1.19e-01 |
| GO:0009141 | 34 | 0.176 | 0.265 | Up | 1.39e-01 | 1.88e-01 | 5.40e-03 | 1.52e-02 |
| GO:1901617 | 9 | 0.111 | 0.000 | Down | 1.39e-01 | 1.89e-01 | 2.07e-01 | 2.38e-01 |
| GO:0006772 | 4 | 0.250 | 0.250 | Up | 1.39e-01 | 1.89e-01 | 3.13e-02 | 5.13e-02 |
| GO:0043413 | 7 | 0.000 | 0.286 | Up | 1.40e-01 | 1.89e-01 | 2.12e-01 | 2.42e-01 |
| GO:0009228 | 4 | 0.250 | 0.250 | Up | 1.42e-01 | 1.92e-01 | 3.37e-02 | 5.33e-02 |
| GO:0046128 | 41 | 0.171 | 0.244 | Up | 1.43e-01 | 1.92e-01 | 3.30e-03 | 1.17e-02 |
| GO:0042278 | 41 | 0.171 | 0.244 | Up | 1.43e-01 | 1.92e-01 | 3.70e-03 | 1.25e-02 |
| GO:0006323 | 10 | 0.200 | 0.200 | Down | 1.43e-01 | 1.92e-01 | 5.65e-02 | 7.65e-02 |
| GO:0009263 | 4 | 0.000 | 0.250 | Up | 1.43e-01 | 1.92e-01 | 5.60e-02 | 7.60e-02 |
| GO:0006486 | 7 | 0.000 | 0.286 | Up | 1.44e-01 | 1.92e-01 | 2.07e-01 | 2.38e-01 |
| GO:0042724 | 4 | 0.250 | 0.250 | Up | 1.44e-01 | 1.92e-01 | 3.26e-02 | 5.26e-02 |
| GO:0032392 | 6 | 0.333 | 0.167 | Down | 1.45e-01 | 1.93e-01 | 7.12e-02 | 9.22e-02 |
| GO:0009101 | 7 | 0.000 | 0.286 | Up | 1.45e-01 | 1.93e-01 | 2.07e-01 | 2.38e-01 |
| GO:0042723 | 4 | 0.250 | 0.250 | Up | 1.46e-01 | 1.94e-01 | 3.28e-02 | 5.26e-02 |
| GO:0070085 | 7 | 0.000 | 0.286 | Up | 1.46e-01 | 1.94e-01 | 2.12e-01 | 2.42e-01 |
| GO:0044262 | 11 | 0.273 | 0.091 | Down | 1.46e-01 | 1.94e-01 | 9.82e-02 | 1.21e-01 |
| GO:0009100 | 7 | 0.000 | 0.286 | Up | 1.47e-01 | 1.95e-01 | 2.12e-01 | 2.42e-01 |
| GO:0008643 | 4 | 0.000 | 0.250 | Up | 1.48e-01 | 1.95e-01 | 2.71e-01 | 3.02e-01 |
| GO:0007165 | 54 | 0.148 | 0.111 | Up | 1.48e-01 | 1.96e-01 | 1.60e-02 | 3.16e-02 |
| GO:0032508 | 6 | 0.333 | 0.167 | Down | 1.49e-01 | 1.96e-01 | 6.97e-02 | 9.07e-02 |
| GO:0006470 | 11 | 0.182 | 0.364 | Up | 1.49e-01 | 1.96e-01 | 1.97e-02 | 3.68e-02 |
| GO:0023052 | 54 | 0.148 | 0.111 | Up | 1.50e-01 | 1.97e-01 | 1.38e-02 | 2.83e-02 |
| GO:0006401 | 10 | 0.200 | 0.100 | Down | 1.50e-01 | 1.97e-01 | 9.03e-02 | 1.13e-01 |
| GO:0010639 | 3 | 0.333 | 0.333 | Down | 1.50e-01 | 1.97e-01 | 3.44e-02 | 5.40e-02 |
| GO:0006432 | 3 | 0.333 | 0.000 | Up | 1.51e-01 | 1.97e-01 | 8.19e-02 | 1.04e-01 |
| GO:0051494 | 3 | 0.333 | 0.333 | Down | 1.51e-01 | 1.97e-01 | 3.81e-02 | 5.74e-02 |
| GO:0018202 | 6 | 0.167 | 0.333 | Up | 1.51e-01 | 1.97e-01 | 4.53e-02 | 6.40e-02 |
| GO:1901658 | 19 | 0.158 | 0.158 | Down | 1.51e-01 | 1.98e-01 | 3.20e-02 | 5.22e-02 |
| GO:0006631 | 29 | 0.103 | 0.172 | Up | 1.52e-01 | 1.98e-01 | 2.26e-01 | 2.55e-01 |
| GO:0042454 | 19 | 0.158 | 0.158 | Down | 1.52e-01 | 1.98e-01 | 2.78e-02 | 4.73e-02 |
| GO:0019439 | 37 | 0.162 | 0.108 | Down | 1.52e-01 | 1.98e-01 | 3.57e-02 | 5.50e-02 |
| GO:0044700 | 54 | 0.148 | 0.111 | Up | 1.54e-01 | 2.00e-01 | 1.51e-02 | 3.02e-02 |
| GO:0006152 | 19 | 0.158 | 0.158 | Down | 1.54e-01 | 2.00e-01 | 3.02e-02 | 4.98e-02 |
| GO:0046130 | 19 | 0.158 | 0.158 | Down | 1.55e-01 | 2.01e-01 | 3.18e-02 | 5.20e-02 |
| GO:1901361 | 39 | 0.154 | 0.103 | Down | 1.57e-01 | 2.03e-01 | 3.62e-02 | 5.56e-02 |
| GO:0030837 | 3 | 0.333 | 0.333 | Down | 1.57e-01 | 2.03e-01 | 3.81e-02 | 5.74e-02 |
| GO:0032446 | 18 | 0.167 | 0.167 | Down | 1.58e-01 | 2.03e-01 | 2.22e-02 | 4.00e-02 |
| GO:0009207 | 17 | 0.176 | 0.176 | Down | 1.59e-01 | 2.04e-01 | 2.36e-02 | 4.20e-02 |
| GO:0031333 | 3 | 0.333 | 0.333 | Down | 1.59e-01 | 2.04e-01 | 3.72e-02 | 5.67e-02 |
| GO:0046700 | 39 | 0.154 | 0.103 | Down | 1.59e-01 | 2.04e-01 | 4.03e-02 | 5.97e-02 |
| GO:0048193 | 26 | 0.115 | 0.192 | Up | 1.60e-01 | 2.04e-01 | 2.82e-02 | 4.78e-02 |
| GO:0051129 | 3 | 0.333 | 0.333 | Down | 1.60e-01 | 2.04e-01 | 3.97e-02 | 5.91e-02 |
| GO:0000956 | 5 | 0.200 | 0.000 | Down | 1.60e-01 | 2.04e-01 | 2.79e-01 | 3.10e-01 |
| GO:1901069 | 17 | 0.176 | 0.176 | Down | 1.60e-01 | 2.04e-01 | 2.04e-02 | 3.74e-02 |
| GO:0032272 | 3 | 0.333 | 0.333 | Down | 1.60e-01 | 2.04e-01 | 3.83e-02 | 5.75e-02 |
| GO:0031497 | 7 | 0.286 | 0.286 | Down | 1.61e-01 | 2.05e-01 | 2.75e-02 | 4.72e-02 |
| GO:0009146 | 17 | 0.176 | 0.176 | Down | 1.62e-01 | 2.06e-01 | 2.37e-02 | 4.21e-02 |
| GO:0072523 | 19 | 0.158 | 0.158 | Down | 1.62e-01 | 2.06e-01 | 3.34e-02 | 5.30e-02 |
| GO:0006195 | 18 | 0.167 | 0.167 | Down | 1.62e-01 | 2.06e-01 | 2.77e-02 | 4.73e-02 |
| GO:0009164 | 19 | 0.158 | 0.158 | Down | 1.62e-01 | 2.06e-01 | 2.95e-02 | 4.91e-02 |
| GO:0009261 | 18 | 0.167 | 0.167 | Down | 1.63e-01 | 2.06e-01 | 2.92e-02 | 4.90e-02 |
| GO:0048522 | 8 | 0.250 | 0.125 | Down | 1.63e-01 | 2.06e-01 | 7.49e-02 | 9.58e-02 |
| GO:0009154 | 18 | 0.167 | 0.167 | Down | 1.64e-01 | 2.07e-01 | 2.72e-02 | 4.70e-02 |
| GO:0006184 | 17 | 0.176 | 0.176 | Down | 1.64e-01 | 2.07e-01 | 2.27e-02 | 4.07e-02 |
| GO:0034655 | 35 | 0.171 | 0.114 | Down | 1.65e-01 | 2.08e-01 | 3.32e-02 | 5.28e-02 |
| GO:0000041 | 7 | 0.143 | 0.143 | Up | 1.65e-01 | 2.08e-01 | 3.44e-02 | 5.40e-02 |
| GO:0009203 | 17 | 0.176 | 0.176 | Down | 1.67e-01 | 2.10e-01 | 2.01e-02 | 3.72e-02 |
| GO:0006544 | 4 | 0.000 | 0.500 | Up | 1.68e-01 | 2.10e-01 | 1.96e-01 | 2.27e-01 |
| GO:0044270 | 39 | 0.154 | 0.103 | Down | 1.68e-01 | 2.10e-01 | 4.28e-02 | 6.16e-02 |
| GO:0015992 | 19 | 0.211 | 0.263 | Up | 1.69e-01 | 2.11e-01 | 5.60e-03 | 1.54e-02 |
| GO:0006446 | 9 | 0.222 | 0.222 | Up | 1.70e-01 | 2.12e-01 | 2.22e-02 | 4.00e-02 |
| GO:1901136 | 23 | 0.174 | 0.130 | Down | 1.71e-01 | 2.13e-01 | 4.16e-02 | 6.03e-02 |
| GO:0006818 | 19 | 0.211 | 0.263 | Up | 1.72e-01 | 2.15e-01 | 6.30e-03 | 1.66e-02 |
| GO:0006284 | 4 | 0.500 | 0.000 | Down | 1.72e-01 | 2.15e-01 | 8.68e-02 | 1.09e-01 |
| GO:0051052 | 4 | 0.000 | 0.250 | Up | 1.74e-01 | 2.16e-01 | 6.70e-02 | 8.88e-02 |
| GO:0006298 | 8 | 0.000 | 0.250 | Up | 1.77e-01 | 2.20e-01 | 2.13e-01 | 2.42e-01 |
| GO:0070838 | 6 | 0.333 | 0.333 | Down | 1.78e-01 | 2.20e-01 | 1.06e-02 | 2.32e-02 |
| GO:0070972 | 8 | 0.125 | 0.250 | Down | 1.81e-01 | 2.24e-01 | 2.30e-02 | 4.11e-02 |
| GO:0043604 | 5 | 0.000 | 0.400 | Up | 1.82e-01 | 2.25e-01 | 1.21e-01 | 1.45e-01 |
| GO:0072511 | 6 | 0.333 | 0.333 | Down | 1.83e-01 | 2.26e-01 | 1.17e-02 | 2.53e-02 |
| GO:0051169 | 25 | 0.160 | 0.040 | Down | 1.83e-01 | 2.26e-01 | 1.95e-01 | 2.26e-01 |
| GO:0006118 | 4 | 0.000 | 0.250 | Up | 1.86e-01 | 2.29e-01 | 3.13e-01 | 3.44e-01 |
| GO:0006913 | 25 | 0.160 | 0.040 | Down | 1.87e-01 | 2.30e-01 | 1.99e-01 | 2.30e-01 |
| GO:1901068 | 19 | 0.158 | 0.211 | Down | 1.88e-01 | 2.31e-01 | 8.20e-03 | 1.95e-02 |
| GO:0008216 | 4 | 0.250 | 0.250 | Down | 1.88e-01 | 2.31e-01 | 4.40e-02 | 6.27e-02 |
| GO:0072521 | 48 | 0.188 | 0.208 | Up | 1.90e-01 | 2.33e-01 | 2.80e-03 | 1.07e-02 |
| GO:0006434 | 3 | 0.333 | 0.000 | Down | 1.91e-01 | 2.34e-01 | 1.52e-01 | 1.80e-01 |
| GO:0009186 | 4 | 0.250 | 0.250 | Up | 1.92e-01 | 2.35e-01 | 1.87e-02 | 3.57e-02 |
| GO:0006595 | 4 | 0.250 | 0.250 | Down | 1.97e-01 | 2.40e-01 | 4.15e-02 | 6.03e-02 |
| GO:0006221 | 7 | 0.286 | 0.143 | Down | 1.99e-01 | 2.43e-01 | 2.78e-02 | 4.73e-02 |
| GO:0006402 | 7 | 0.143 | 0.000 | Down | 2.00e-01 | 2.44e-01 | 2.37e-01 | 2.67e-01 |
| GO:0046039 | 18 | 0.167 | 0.222 | Down | 2.02e-01 | 2.46e-01 | 8.40e-03 | 1.99e-02 |
| GO:0044417 | 4 | 0.000 | 0.250 | Up | 2.02e-01 | 2.46e-01 | 1.19e-01 | 1.44e-01 |
| GO:0031334 | 2 | 0.000 | 0.000 | Down | 2.07e-01 | 2.52e-01 | 3.66e-01 | 3.95e-01 |
| GO:0042274 | 9 | 0.222 | 0.222 | Down | 2.09e-01 | 2.53e-01 | 2.32e-02 | 4.14e-02 |
| GO:0044053 | 4 | 0.000 | 0.250 | Up | 2.09e-01 | 2.53e-01 | 1.24e-01 | 1.48e-01 |
| GO:0051836 | 4 | 0.000 | 0.250 | Up | 2.09e-01 | 2.53e-01 | 1.18e-01 | 1.43e-01 |
| GO:0042000 | 4 | 0.000 | 0.250 | Up | 2.09e-01 | 2.53e-01 | 1.17e-01 | 1.42e-01 |
| GO:0010638 | 2 | 0.000 | 0.000 | Down | 2.10e-01 | 2.53e-01 | 3.72e-01 | 4.00e-01 |
| GO:0051808 | 4 | 0.000 | 0.250 | Up | 2.12e-01 | 2.54e-01 | 1.18e-01 | 1.42e-01 |
| GO:0035556 | 36 | 0.167 | 0.111 | Down | 2.12e-01 | 2.54e-01 | 3.36e-02 | 5.32e-02 |
| GO:0006855 | 3 | 0.000 | 0.000 | Up | 2.12e-01 | 2.54e-01 | 2.18e-01 | 2.48e-01 |
| GO:0051495 | 2 | 0.000 | 0.000 | Down | 2.12e-01 | 2.54e-01 | 3.73e-01 | 4.01e-01 |
| GO:0072330 | 21 | 0.095 | 0.143 | Up | 2.12e-01 | 2.54e-01 | 2.88e-01 | 3.18e-01 |
| GO:0030838 | 2 | 0.000 | 0.000 | Down | 2.12e-01 | 2.54e-01 | 3.69e-01 | 3.97e-01 |
| GO:1902579 | 4 | 0.000 | 0.250 | Up | 2.15e-01 | 2.56e-01 | 1.21e-01 | 1.45e-01 |
| GO:0015931 | 11 | 0.182 | 0.182 | Down | 2.15e-01 | 2.56e-01 | 5.44e-02 | 7.44e-02 |
| GO:0045010 | 2 | 0.000 | 0.000 | Down | 2.16e-01 | 2.58e-01 | 3.71e-01 | 3.99e-01 |
| GO:0044766 | 4 | 0.000 | 0.250 | Up | 2.16e-01 | 2.58e-01 | 1.25e-01 | 1.49e-01 |
| GO:0032273 | 2 | 0.000 | 0.000 | Down | 2.17e-01 | 2.59e-01 | 3.79e-01 | 4.07e-01 |
| GO:0009166 | 19 | 0.158 | 0.158 | Down | 2.19e-01 | 2.60e-01 | 3.88e-02 | 5.81e-02 |
| GO:0015893 | 3 | 0.000 | 0.000 | Up | 2.21e-01 | 2.62e-01 | 2.23e-01 | 2.52e-01 |
| GO:0071897 | 1 | 0.000 | 0.000 | Up | 2.23e-01 | 2.64e-01 | 2.23e-01 | 2.52e-01 |
| GO:0015858 | 3 | 0.000 | 0.333 | Up | 2.26e-01 | 2.67e-01 | 2.02e-01 | 2.33e-01 |
| GO:0006633 | 19 | 0.105 | 0.158 | Up | 2.29e-01 | 2.71e-01 | 2.40e-01 | 2.70e-01 |
| GO:0009143 | 18 | 0.167 | 0.167 | Down | 2.32e-01 | 2.75e-01 | 3.48e-02 | 5.41e-02 |
| GO:0006333 | 12 | 0.250 | 0.250 | Down | 2.36e-01 | 2.79e-01 | 4.94e-02 | 6.89e-02 |
| GO:0030261 | 2 | 0.000 | 0.000 | Down | 2.37e-01 | 2.79e-01 | 3.60e-01 | 3.90e-01 |
| GO:0006914 | 6 | 0.333 | 0.000 | Down | 2.38e-01 | 2.80e-01 | 2.03e-01 | 2.34e-01 |
| GO:0009126 | 17 | 0.118 | 0.294 | Up | 2.39e-01 | 2.81e-01 | 8.89e-02 | 1.11e-01 |
| GO:0009167 | 17 | 0.118 | 0.294 | Up | 2.39e-01 | 2.81e-01 | 9.16e-02 | 1.14e-01 |
| GO:0006405 | 4 | 0.250 | 0.250 | Down | 2.41e-01 | 2.83e-01 | 5.33e-02 | 7.32e-02 |
| GO:0009064 | 9 | 0.111 | 0.111 | Down | 2.50e-01 | 2.93e-01 | 7.80e-02 | 9.90e-02 |
| GO:0006512 | 5 | 0.400 | 0.000 | Down | 2.55e-01 | 2.98e-01 | 9.86e-02 | 1.21e-01 |
| GO:0046434 | 22 | 0.182 | 0.136 | Down | 2.59e-01 | 3.03e-01 | 4.15e-02 | 6.03e-02 |
| GO:0051247 | 3 | 0.333 | 0.333 | Up | 2.60e-01 | 3.03e-01 | 3.78e-02 | 5.74e-02 |
| GO:0015849 | 13 | 0.154 | 0.077 | Down | 2.60e-01 | 3.03e-01 | 9.44e-02 | 1.17e-01 |
| GO:0032270 | 3 | 0.333 | 0.333 | Up | 2.62e-01 | 3.05e-01 | 3.50e-02 | 5.42e-02 |
| GO:0007034 | 5 | 0.200 | 0.200 | Down | 2.63e-01 | 3.06e-01 | 4.23e-02 | 6.12e-02 |
| GO:0052652 | 2 | 0.500 | 0.000 | Down | 2.64e-01 | 3.06e-01 | 1.15e-01 | 1.39e-01 |
| GO:0046068 | 2 | 0.500 | 0.000 | Down | 2.68e-01 | 3.11e-01 | 1.14e-01 | 1.38e-01 |
| GO:0046394 | 39 | 0.128 | 0.179 | Up | 2.71e-01 | 3.14e-01 | 4.47e-02 | 6.35e-02 |
| GO:0009063 | 6 | 0.167 | 0.333 | Up | 2.71e-01 | 3.14e-01 | 1.72e-01 | 2.02e-01 |
| GO:0046942 | 13 | 0.154 | 0.077 | Down | 2.72e-01 | 3.14e-01 | 9.80e-02 | 1.20e-01 |
| GO:1901264 | 5 | 0.000 | 0.200 | Up | 2.74e-01 | 3.16e-01 | 3.00e-01 | 3.30e-01 |
| GO:0016053 | 39 | 0.128 | 0.179 | Up | 2.76e-01 | 3.18e-01 | 4.98e-02 | 6.92e-02 |
| GO:0000226 | 5 | 0.000 | 0.200 | Up | 2.78e-01 | 3.20e-01 | 3.87e-01 | 4.14e-01 |
| GO:1901606 | 6 | 0.167 | 0.333 | Up | 2.78e-01 | 3.20e-01 | 1.75e-01 | 2.04e-01 |
| GO:0044093 | 4 | 0.250 | 0.250 | Down | 2.80e-01 | 3.22e-01 | 6.40e-02 | 8.55e-02 |
| GO:0009123 | 18 | 0.111 | 0.278 | Up | 2.82e-01 | 3.23e-01 | 8.71e-02 | 1.09e-01 |
| GO:0019692 | 3 | 0.333 | 0.000 | Down | 2.82e-01 | 3.23e-01 | 1.18e-01 | 1.43e-01 |
| GO:0043952 | 5 | 0.200 | 0.200 | Down | 2.85e-01 | 3.26e-01 | 2.81e-02 | 4.77e-02 |
| GO:0009200 | 3 | 0.333 | 0.000 | Down | 2.86e-01 | 3.27e-01 | 1.21e-01 | 1.45e-01 |
| GO:0043085 | 4 | 0.250 | 0.250 | Down | 2.87e-01 | 3.27e-01 | 6.79e-02 | 8.93e-02 |
| GO:0009394 | 3 | 0.333 | 0.000 | Down | 2.87e-01 | 3.27e-01 | 1.23e-01 | 1.47e-01 |
| GO:0007264 | 24 | 0.167 | 0.125 | Down | 2.90e-01 | 3.30e-01 | 4.05e-02 | 5.98e-02 |
| GO:0006370 | 3 | 0.000 | 0.000 | Down | 2.92e-01 | 3.32e-01 | 3.04e-01 | 3.34e-01 |
| GO:0009069 | 7 | 0.000 | 0.286 | Up | 2.93e-01 | 3.33e-01 | 2.41e-01 | 2.70e-01 |
| GO:1901292 | 20 | 0.150 | 0.150 | Down | 2.94e-01 | 3.34e-01 | 5.38e-02 | 7.37e-02 |
| GO:0009161 | 18 | 0.111 | 0.278 | Up | 2.95e-01 | 3.34e-01 | 9.50e-02 | 1.17e-01 |
| GO:0040029 | 3 | 0.333 | 0.000 | Down | 3.03e-01 | 3.43e-01 | 2.83e-01 | 3.14e-01 |
| GO:0006429 | 2 | 0.500 | 0.000 | Down | 3.06e-01 | 3.46e-01 | 2.00e-01 | 2.31e-01 |
| GO:0006360 | 3 | 0.333 | 0.000 | Down | 3.07e-01 | 3.47e-01 | 8.80e-02 | 1.10e-01 |
| GO:0006720 | 7 | 0.143 | 0.143 | Down | 3.11e-01 | 3.51e-01 | 3.57e-02 | 5.50e-02 |
| GO:0007067 | 11 | 0.000 | 0.091 | Up | 3.11e-01 | 3.51e-01 | 5.29e-01 | 5.50e-01 |
| GO:0008299 | 7 | 0.143 | 0.143 | Down | 3.15e-01 | 3.54e-01 | 3.73e-02 | 5.68e-02 |
| GO:0016458 | 3 | 0.333 | 0.333 | Down | 3.15e-01 | 3.55e-01 | 4.13e-02 | 6.03e-02 |
| GO:0006040 | 4 | 0.250 | 0.250 | Up | 3.18e-01 | 3.58e-01 | 9.36e-02 | 1.16e-01 |
| GO:0016925 | 4 | 0.250 | 0.250 | Down | 3.22e-01 | 3.62e-01 | 4.59e-02 | 6.47e-02 |
| GO:0006269 | 2 | 0.000 | 0.500 | Up | 3.25e-01 | 3.64e-01 | 2.89e-01 | 3.20e-01 |
| GO:0006072 | 5 | 0.400 | 0.200 | Down | 3.27e-01 | 3.66e-01 | 1.10e-01 | 1.35e-01 |
| GO:0052646 | 6 | 0.333 | 0.333 | Up | 3.29e-01 | 3.68e-01 | 4.37e-02 | 6.24e-02 |
| GO:0007169 | 3 | 0.000 | 0.000 | Up | 3.44e-01 | 3.84e-01 | 4.87e-01 | 5.12e-01 |
| GO:0006302 | 5 | 0.000 | 0.200 | Up | 3.47e-01 | 3.88e-01 | 3.28e-01 | 3.59e-01 |
| GO:0007167 | 3 | 0.000 | 0.000 | Up | 3.51e-01 | 3.91e-01 | 4.88e-01 | 5.12e-01 |
| GO:1901071 | 3 | 0.333 | 0.333 | Down | 3.55e-01 | 3.95e-01 | 1.27e-01 | 1.52e-01 |
| GO:0009190 | 3 | 0.333 | 0.000 | Down | 3.55e-01 | 3.95e-01 | 2.37e-01 | 2.67e-01 |
| GO:0051168 | 8 | 0.125 | 0.125 | Down | 3.64e-01 | 4.04e-01 | 2.30e-01 | 2.60e-01 |
| GO:0000027 | 8 | 0.125 | 0.000 | Down | 3.65e-01 | 4.05e-01 | 2.92e-01 | 3.22e-01 |
| GO:0006119 | 3 | 0.333 | 0.333 | Down | 3.72e-01 | 4.12e-01 | 1.30e-01 | 1.55e-01 |
| GO:0002377 | 3 | 0.000 | 0.000 | Up | 3.77e-01 | 4.17e-01 | 2.12e-01 | 2.42e-01 |
| GO:0002440 | 3 | 0.000 | 0.000 | Up | 3.77e-01 | 4.17e-01 | 2.09e-01 | 2.40e-01 |
| GO:0070925 | 15 | 0.133 | 0.067 | Down | 3.80e-01 | 4.19e-01 | 2.93e-01 | 3.23e-01 |
| GO:0042773 | 3 | 0.333 | 0.333 | Down | 3.81e-01 | 4.20e-01 | 1.28e-01 | 1.52e-01 |
| GO:0009070 | 2 | 0.000 | 0.500 | Up | 3.82e-01 | 4.21e-01 | 2.22e-01 | 2.52e-01 |
| GO:0009187 | 4 | 0.250 | 0.000 | Down | 3.90e-01 | 4.29e-01 | 3.80e-01 | 4.08e-01 |
| GO:0008645 | 2 | 0.000 | 0.000 | Up | 3.91e-01 | 4.30e-01 | 5.05e-01 | 5.30e-01 |
| GO:0015749 | 2 | 0.000 | 0.000 | Up | 3.94e-01 | 4.32e-01 | 5.13e-01 | 5.37e-01 |
| GO:0006268 | 2 | 0.500 | 0.000 | Down | 3.95e-01 | 4.33e-01 | 3.39e-01 | 3.68e-01 |
| GO:0006270 | 11 | 0.091 | 0.182 | Up | 3.96e-01 | 4.34e-01 | 1.86e-01 | 2.16e-01 |
| GO:0009066 | 4 | 0.250 | 0.000 | Down | 3.97e-01 | 4.35e-01 | 6.64e-01 | 6.76e-01 |
| GO:0009084 | 3 | 0.000 | 0.000 | Down | 3.99e-01 | 4.36e-01 | 5.27e-01 | 5.49e-01 |
| GO:0006611 | 3 | 0.000 | 0.333 | Up | 4.12e-01 | 4.50e-01 | 1.83e-01 | 2.13e-01 |
| GO:0006122 | 2 | 0.000 | 0.500 | Up | 4.13e-01 | 4.51e-01 | 3.52e-01 | 3.81e-01 |
| GO:0042775 | 2 | 0.000 | 0.500 | Up | 4.17e-01 | 4.54e-01 | 3.51e-01 | 3.81e-01 |
| GO:0006614 | 5 | 0.200 | 0.200 | Down | 4.33e-01 | 4.71e-01 | 9.28e-02 | 1.15e-01 |
| GO:0006613 | 5 | 0.200 | 0.200 | Down | 4.36e-01 | 4.74e-01 | 9.49e-02 | 1.17e-01 |
| GO:0030048 | 4 | 0.250 | 0.250 | Up | 4.37e-01 | 4.74e-01 | 8.63e-02 | 1.08e-01 |
| GO:0050793 | 4 | 0.000 | 0.250 | Up | 4.38e-01 | 4.75e-01 | 2.79e-01 | 3.10e-01 |
| GO:0046777 | 1 | 0.000 | 0.000 | Up | 4.40e-01 | 4.76e-01 | 4.40e-01 | 4.65e-01 |
| GO:0000302 | 3 | 0.000 | 0.000 | Up | 4.40e-01 | 4.76e-01 | 5.27e-01 | 5.49e-01 |
| GO:1901700 | 3 | 0.000 | 0.000 | Up | 4.41e-01 | 4.77e-01 | 5.28e-01 | 5.49e-01 |
| GO:0006546 | 3 | 0.000 | 0.333 | Up | 4.44e-01 | 4.79e-01 | 3.92e-01 | 4.19e-01 |
| GO:0010035 | 3 | 0.000 | 0.000 | Up | 4.45e-01 | 4.79e-01 | 5.26e-01 | 5.49e-01 |
| GO:0009234 | 2 | 0.000 | 0.000 | Up | 4.45e-01 | 4.79e-01 | 4.21e-01 | 4.47e-01 |
| GO:0007033 | 4 | 0.250 | 0.000 | Down | 4.45e-01 | 4.79e-01 | 1.27e-01 | 1.51e-01 |
| GO:0006541 | 2 | 0.000 | 0.000 | Down | 4.46e-01 | 4.79e-01 | 4.22e-01 | 4.47e-01 |
| GO:0009233 | 2 | 0.000 | 0.000 | Up | 4.49e-01 | 4.82e-01 | 4.28e-01 | 4.53e-01 |
| GO:0006888 | 20 | 0.150 | 0.150 | Down | 4.50e-01 | 4.82e-01 | 7.38e-02 | 9.48e-02 |
| GO:0009071 | 3 | 0.000 | 0.333 | Up | 4.53e-01 | 4.85e-01 | 3.95e-01 | 4.21e-01 |
| GO:0006424 | 3 | 0.000 | 0.000 | Up | 4.59e-01 | 4.91e-01 | 2.71e-01 | 3.02e-01 |
| GO:0009219 | 2 | 0.000 | 0.000 | Up | 4.62e-01 | 4.94e-01 | 4.64e-01 | 4.90e-01 |
| GO:0006787 | 2 | 0.000 | 0.000 | Down | 4.67e-01 | 4.98e-01 | 5.06e-01 | 5.30e-01 |
| GO:0097428 | 1 | 0.000 | 0.000 | Down | 4.69e-01 | 5.00e-01 | 4.69e-01 | 4.94e-01 |
| GO:0048856 | 4 | 0.000 | 0.250 | Up | 4.76e-01 | 5.07e-01 | 3.66e-01 | 3.95e-01 |
| GO:0006885 | 8 | 0.125 | 0.125 | Down | 4.77e-01 | 5.08e-01 | 1.56e-01 | 1.84e-01 |
| GO:0033015 | 2 | 0.000 | 0.000 | Down | 4.78e-01 | 5.08e-01 | 5.16e-01 | 5.39e-01 |
| GO:0055067 | 8 | 0.125 | 0.125 | Down | 4.89e-01 | 5.19e-01 | 1.58e-01 | 1.86e-01 |
| GO:0016197 | 3 | 0.000 | 0.000 | Down | 4.97e-01 | 5.27e-01 | 4.03e-01 | 4.28e-01 |
| GO:0006891 | 3 | 0.000 | 0.000 | Up | 4.98e-01 | 5.27e-01 | 3.96e-01 | 4.22e-01 |
| GO:0042147 | 3 | 0.000 | 0.000 | Down | 5.04e-01 | 5.34e-01 | 4.01e-01 | 4.27e-01 |
| GO:0000280 | 14 | 0.071 | 0.071 | Up | 5.05e-01 | 5.34e-01 | 3.36e-01 | 3.66e-01 |
| GO:0048285 | 14 | 0.071 | 0.071 | Up | 5.14e-01 | 5.43e-01 | 3.41e-01 | 3.70e-01 |
| GO:0015908 | 3 | 0.333 | 0.000 | Up | 5.19e-01 | 5.48e-01 | 2.69e-01 | 3.01e-01 |
| GO:0000290 | 3 | 0.000 | 0.000 | Down | 5.34e-01 | 5.63e-01 | 6.44e-01 | 6.61e-01 |
| GO:0000288 | 3 | 0.000 | 0.000 | Down | 5.35e-01 | 5.63e-01 | 6.48e-01 | 6.63e-01 |
| GO:0006308 | 4 | 0.250 | 0.000 | Up | 5.51e-01 | 5.79e-01 | 1.77e-01 | 2.06e-01 |
| GO:0000724 | 2 | 0.000 | 0.000 | Down | 5.65e-01 | 5.93e-01 | 5.40e-01 | 5.59e-01 |
| GO:0000725 | 2 | 0.000 | 0.000 | Down | 5.71e-01 | 5.99e-01 | 5.43e-01 | 5.61e-01 |
| GO:0042255 | 11 | 0.091 | 0.091 | Down | 5.80e-01 | 6.08e-01 | 3.27e-01 | 3.58e-01 |
| GO:0008283 | 3 | 0.000 | 0.000 | Up | 5.81e-01 | 6.09e-01 | 4.72e-01 | 4.97e-01 |
| GO:0000070 | 2 | 0.000 | 0.000 | Down | 5.99e-01 | 6.26e-01 | 7.90e-01 | 7.99e-01 |
| GO:0000387 | 4 | 0.250 | 0.000 | Down | 6.00e-01 | 6.27e-01 | 6.00e-01 | 6.18e-01 |
| GO:0000819 | 2 | 0.000 | 0.000 | Down | 6.18e-01 | 6.44e-01 | 8.04e-01 | 8.11e-01 |
| GO:0022603 | 2 | 0.000 | 0.000 | Up | 6.19e-01 | 6.45e-01 | 3.95e-01 | 4.21e-01 |
| GO:0051452 | 7 | 0.000 | 0.143 | Up | 6.45e-01 | 6.71e-01 | 3.24e-01 | 3.56e-01 |
| GO:0045851 | 7 | 0.000 | 0.143 | Up | 6.47e-01 | 6.72e-01 | 3.25e-01 | 3.56e-01 |
| GO:0030641 | 7 | 0.000 | 0.143 | Up | 6.50e-01 | 6.75e-01 | 3.32e-01 | 3.62e-01 |
| GO:0030004 | 7 | 0.000 | 0.143 | Up | 6.50e-01 | 6.75e-01 | 3.30e-01 | 3.61e-01 |
| GO:0051453 | 7 | 0.000 | 0.143 | Up | 6.53e-01 | 6.77e-01 | 3.36e-01 | 3.66e-01 |
| GO:0007035 | 7 | 0.000 | 0.143 | Up | 6.55e-01 | 6.79e-01 | 3.27e-01 | 3.58e-01 |
| GO:0022900 | 7 | 0.143 | 0.143 | Up | 6.80e-01 | 7.03e-01 | 3.88e-01 | 4.15e-01 |
| GO:0022904 | 6 | 0.167 | 0.167 | Up | 6.82e-01 | 7.04e-01 | 2.79e-01 | 3.10e-01 |
| GO:0006865 | 4 | 0.000 | 0.000 | Up | 6.82e-01 | 7.04e-01 | 6.48e-01 | 6.63e-01 |
| GO:0009225 | 4 | 0.000 | 0.000 | Up | 6.93e-01 | 7.14e-01 | 4.49e-01 | 4.74e-01 |
| GO:0034637 | 3 | 0.000 | 0.000 | Down | 7.05e-01 | 7.24e-01 | 6.05e-01 | 6.22e-01 |
| GO:0019673 | 3 | 0.000 | 0.000 | Down | 7.05e-01 | 7.24e-01 | 6.06e-01 | 6.22e-01 |
| GO:0016114 | 2 | 0.000 | 0.000 | Down | 7.06e-01 | 7.24e-01 | 6.45e-01 | 6.62e-01 |
| GO:0000304 | 2 | 0.000 | 0.000 | Up | 7.06e-01 | 7.24e-01 | 6.51e-01 | 6.65e-01 |
| GO:0009072 | 3 | 0.000 | 0.000 | Up | 7.07e-01 | 7.24e-01 | 8.02e-01 | 8.10e-01 |
| GO:0009073 | 3 | 0.000 | 0.000 | Up | 7.07e-01 | 7.24e-01 | 8.03e-01 | 8.11e-01 |
| GO:0006721 | 2 | 0.000 | 0.000 | Down | 7.13e-01 | 7.29e-01 | 6.49e-01 | 6.63e-01 |
| GO:0006836 | 1 | 0.000 | 0.000 | Down | 7.18e-01 | 7.34e-01 | 6.62e-01 | 6.76e-01 |
| GO:0051187 | 3 | 0.000 | 0.000 | Down | 7.37e-01 | 7.53e-01 | 4.78e-01 | 5.03e-01 |
| GO:0051170 | 10 | 0.100 | 0.000 | Down | 7.45e-01 | 7.60e-01 | 5.42e-01 | 5.61e-01 |
| GO:0044744 | 10 | 0.100 | 0.000 | Down | 7.47e-01 | 7.60e-01 | 5.37e-01 | 5.57e-01 |
| GO:0034504 | 10 | 0.100 | 0.000 | Down | 7.47e-01 | 7.60e-01 | 5.43e-01 | 5.61e-01 |
| GO:1902593 | 10 | 0.100 | 0.000 | Down | 7.48e-01 | 7.60e-01 | 5.38e-01 | 5.57e-01 |
| GO:0006606 | 10 | 0.100 | 0.000 | Down | 7.49e-01 | 7.61e-01 | 5.45e-01 | 5.62e-01 |
| GO:0000096 | 3 | 0.000 | 0.000 | Down | 7.68e-01 | 7.79e-01 | 5.29e-01 | 5.50e-01 |
| GO:0060249 | 3 | 0.000 | 0.000 | Down | 7.91e-01 | 8.02e-01 | 8.30e-01 | 8.36e-01 |
| GO:0000723 | 3 | 0.000 | 0.000 | Down | 7.99e-01 | 8.08e-01 | 8.33e-01 | 8.37e-01 |
| GO:0032200 | 3 | 0.000 | 0.000 | Down | 8.00e-01 | 8.08e-01 | 8.33e-01 | 8.37e-01 |
| GO:0006471 | 3 | 0.000 | 0.000 | Up | 8.00e-01 | 8.08e-01 | 8.34e-01 | 8.37e-01 |
| GO:0031109 | 3 | 0.000 | 0.000 | Up | 8.03e-01 | 8.09e-01 | 7.11e-01 | 7.21e-01 |
| GO:0007020 | 3 | 0.000 | 0.000 | Up | 8.03e-01 | 8.09e-01 | 7.14e-01 | 7.23e-01 |
| GO:0046785 | 3 | 0.000 | 0.000 | Up | 8.07e-01 | 8.13e-01 | 7.15e-01 | 7.23e-01 |
| GO:0009067 | 3 | 0.000 | 0.000 | Down | 8.64e-01 | 8.69e-01 | 9.18e-01 | 9.18e-01 |
| GO:0042819 | 3 | 0.000 | 0.000 | Up | 8.77e-01 | 8.81e-01 | 6.96e-01 | 7.08e-01 |
| GO:0042816 | 3 | 0.000 | 0.000 | Up | 8.82e-01 | 8.86e-01 | 6.95e-01 | 7.08e-01 |
| GO:0008614 | 3 | 0.000 | 0.000 | Up | 8.83e-01 | 8.86e-01 | 6.98e-01 | 7.09e-01 |
| GO:0009432 | 2 | 0.000 | 0.000 | Down | 9.21e-01 | 9.22e-01 | 8.52e-01 | 8.53e-01 |
| GO:0072525 | 4 | 0.000 | 0.000 | Down | 9.21e-01 | 9.22e-01 | 8.34e-01 | 8.37e-01 |
| GO:0006607 | 3 | 0.000 | 0.000 | Down | 9.26e-01 | 9.26e-01 | 8.40e-01 | 8.42e-01 |
Also test using limma’s camera
go_cam$PValue <- format(go_cam$PValue, scientific = TRUE, digits = 3)
go_cam$FDR <- format(go_cam$FDR, scientific = TRUE, digits = 3)
kable(go_cam)
| NGenes | Direction | PValue | FDR | |
|---|---|---|---|---|
| GO:0016337 | 54 | Down | 9.71e-23 | 4.68e-20 |
| GO:0098602 | 54 | Down | 9.71e-23 | 4.68e-20 |
| GO:0007155 | 69 | Down | 1.93e-18 | 6.21e-16 |
| GO:0009405 | 84 | Down | 6.74e-18 | 1.62e-15 |
| GO:0020035 | 93 | Down | 5.91e-17 | 5.67e-15 |
| GO:0044406 | 93 | Down | 5.91e-17 | 5.67e-15 |
| GO:0034118 | 87 | Down | 9.47e-17 | 5.67e-15 |
| GO:0020013 | 87 | Down | 9.47e-17 | 5.67e-15 |
| GO:0030155 | 87 | Down | 9.47e-17 | 5.67e-15 |
| GO:0034110 | 87 | Down | 9.47e-17 | 5.67e-15 |
| GO:0022407 | 87 | Down | 9.47e-17 | 5.67e-15 |
| GO:0009607 | 94 | Down | 1.15e-16 | 5.67e-15 |
| GO:0051807 | 93 | Down | 1.18e-16 | 5.67e-15 |
| GO:0051834 | 93 | Down | 1.18e-16 | 5.67e-15 |
| GO:0051832 | 93 | Down | 1.18e-16 | 5.67e-15 |
| GO:0043207 | 93 | Down | 1.18e-16 | 5.67e-15 |
| GO:0051707 | 93 | Down | 1.18e-16 | 5.67e-15 |
| GO:0052173 | 93 | Down | 1.18e-16 | 5.67e-15 |
| GO:0052564 | 93 | Down | 1.18e-16 | 5.67e-15 |
| GO:0051805 | 93 | Down | 1.18e-16 | 5.67e-15 |
| GO:0044068 | 88 | Down | 1.50e-16 | 6.88e-15 |
| GO:0051809 | 92 | Down | 1.74e-16 | 7.29e-15 |
| GO:0020033 | 92 | Down | 1.74e-16 | 7.29e-15 |
| GO:0044003 | 89 | Down | 3.52e-16 | 1.36e-14 |
| GO:0051817 | 89 | Down | 3.52e-16 | 1.36e-14 |
| GO:0009605 | 100 | Down | 7.96e-16 | 2.95e-14 |
| GO:0035821 | 90 | Down | 1.27e-15 | 4.55e-14 |
| GO:0022610 | 113 | Down | 1.99e-14 | 6.86e-13 |
| GO:0051704 | 189 | Down | 3.04e-08 | 1.01e-06 |
| GO:0044403 | 157 | Down | 1.04e-07 | 3.23e-06 |
| GO:0044419 | 157 | Down | 1.04e-07 | 3.23e-06 |
| GO:0065008 | 149 | Down | 1.23e-07 | 3.69e-06 |
| GO:0051701 | 147 | Down | 1.97e-07 | 5.74e-06 |
| GO:0050896 | 291 | Down | 7.09e-05 | 2.01e-03 |
| GO:0006096 | 17 | Down | 2.70e-04 | 7.43e-03 |
| GO:0044724 | 24 | Down | 3.80e-04 | 9.90e-03 |
| GO:0016052 | 24 | Down | 3.80e-04 | 9.90e-03 |
| GO:0006457 | 72 | Down | 4.29e-04 | 1.09e-02 |
| GO:0019319 | 6 | Down | 2.54e-03 | 6.06e-02 |
| GO:0046364 | 6 | Down | 2.54e-03 | 6.06e-02 |
| GO:0050789 | 380 | Down | 2.58e-03 | 6.06e-02 |
| GO:0006094 | 5 | Down | 2.74e-03 | 6.28e-02 |
| GO:0044723 | 42 | Down | 3.60e-03 | 8.07e-02 |
| GO:0050794 | 359 | Down | 4.64e-03 | 1.02e-01 |
| GO:0070682 | 6 | Down | 5.41e-03 | 1.16e-01 |
| GO:0065007 | 401 | Down | 6.25e-03 | 1.29e-01 |
| GO:0016485 | 10 | Down | 6.38e-03 | 1.29e-01 |
| GO:0006006 | 12 | Down | 6.45e-03 | 1.29e-01 |
| GO:0019318 | 14 | Down | 6.69e-03 | 1.29e-01 |
| GO:0005996 | 14 | Down | 6.69e-03 | 1.29e-01 |
| GO:0016051 | 12 | Down | 9.52e-03 | 1.80e-01 |
| GO:0005975 | 53 | Down | 1.03e-02 | 1.91e-01 |
| GO:0016255 | 4 | Up | 1.06e-02 | 1.93e-01 |
| GO:0051604 | 12 | Down | 1.18e-02 | 2.06e-01 |
| GO:0006497 | 18 | Up | 1.22e-02 | 2.06e-01 |
| GO:0042158 | 18 | Up | 1.22e-02 | 2.06e-01 |
| GO:0042157 | 18 | Up | 1.22e-02 | 2.06e-01 |
| GO:0031123 | 8 | Up | 1.50e-02 | 2.49e-01 |
| GO:0007275 | 6 | Up | 1.54e-02 | 2.51e-01 |
| GO:0006506 | 9 | Up | 1.62e-02 | 2.61e-01 |
| GO:0042176 | 3 | Down | 1.65e-02 | 2.61e-01 |
| GO:0042026 | 3 | Down | 1.69e-02 | 2.61e-01 |
| GO:0000375 | 64 | Down | 1.74e-02 | 2.61e-01 |
| GO:0001817 | 3 | Down | 1.79e-02 | 2.61e-01 |
| GO:0051239 | 3 | Down | 1.79e-02 | 2.61e-01 |
| GO:0009396 | 4 | Down | 1.80e-02 | 2.61e-01 |
| GO:0031167 | 2 | Down | 1.81e-02 | 2.61e-01 |
| GO:0006643 | 15 | Up | 1.84e-02 | 2.61e-01 |
| GO:0051051 | 3 | Up | 2.04e-02 | 2.85e-01 |
| GO:0044712 | 59 | Down | 2.10e-02 | 2.87e-01 |
| GO:0008380 | 81 | Down | 2.12e-02 | 2.87e-01 |
| GO:0046467 | 13 | Up | 2.20e-02 | 2.94e-01 |
| GO:0000245 | 9 | Down | 2.22e-02 | 2.94e-01 |
| GO:0006505 | 10 | Up | 2.26e-02 | 2.94e-01 |
| GO:0051276 | 43 | Down | 2.35e-02 | 3.03e-01 |
| GO:0022613 | 98 | Down | 2.42e-02 | 3.05e-01 |
| GO:0044767 | 11 | Up | 2.44e-02 | 3.05e-01 |
| GO:0006661 | 10 | Up | 2.85e-02 | 3.52e-01 |
| GO:0032312 | 2 | Up | 2.91e-02 | 3.55e-01 |
| GO:0071900 | 3 | Up | 3.02e-02 | 3.57e-01 |
| GO:0000079 | 3 | Up | 3.02e-02 | 3.57e-01 |
| GO:0044707 | 7 | Up | 3.04e-02 | 3.57e-01 |
| GO:0035383 | 7 | Up | 3.11e-02 | 3.57e-01 |
| GO:0006637 | 7 | Up | 3.11e-02 | 3.57e-01 |
| GO:0009247 | 12 | Up | 3.20e-02 | 3.63e-01 |
| GO:0016571 | 5 | Down | 3.24e-02 | 3.63e-01 |
| GO:0000377 | 59 | Down | 3.44e-02 | 3.77e-01 |
| GO:0000398 | 59 | Down | 3.44e-02 | 3.77e-01 |
| GO:0008154 | 1 | Down | 3.55e-02 | 3.84e-01 |
| GO:0009206 | 8 | Up | 3.63e-02 | 3.84e-01 |
| GO:0009201 | 8 | Up | 3.63e-02 | 3.84e-01 |
| GO:0022616 | 5 | Up | 3.77e-02 | 3.90e-01 |
| GO:0006271 | 5 | Up | 3.77e-02 | 3.90e-01 |
| GO:0051188 | 30 | Up | 3.84e-02 | 3.94e-01 |
| GO:0006664 | 13 | Up | 3.94e-02 | 4.00e-01 |
| GO:1901575 | 165 | Down | 4.23e-02 | 4.25e-01 |
| GO:0009056 | 171 | Down | 4.31e-02 | 4.29e-01 |
| GO:0032502 | 12 | Up | 4.58e-02 | 4.47e-01 |
| GO:0006084 | 5 | Up | 4.59e-02 | 4.47e-01 |
| GO:0043543 | 15 | Up | 4.91e-02 | 4.53e-01 |
| GO:0031399 | 5 | Up | 5.04e-02 | 4.53e-01 |
| GO:0001932 | 5 | Up | 5.04e-02 | 4.53e-01 |
| GO:0042325 | 5 | Up | 5.04e-02 | 4.53e-01 |
| GO:0000910 | 4 | Up | 5.07e-02 | 4.53e-01 |
| GO:0071826 | 31 | Down | 5.20e-02 | 4.53e-01 |
| GO:0032507 | 2 | Up | 5.29e-02 | 4.53e-01 |
| GO:0051651 | 2 | Up | 5.29e-02 | 4.53e-01 |
| GO:0071616 | 4 | Up | 5.39e-02 | 4.53e-01 |
| GO:0006085 | 4 | Up | 5.39e-02 | 4.53e-01 |
| GO:0006086 | 4 | Up | 5.39e-02 | 4.53e-01 |
| GO:0035384 | 4 | Up | 5.39e-02 | 4.53e-01 |
| GO:0006465 | 7 | Down | 5.45e-02 | 4.53e-01 |
| GO:0046148 | 6 | Up | 5.54e-02 | 4.53e-01 |
| GO:0033014 | 6 | Up | 5.54e-02 | 4.53e-01 |
| GO:0006783 | 6 | Up | 5.54e-02 | 4.53e-01 |
| GO:0006779 | 6 | Up | 5.54e-02 | 4.53e-01 |
| GO:0071840 | 251 | Down | 5.54e-02 | 4.53e-01 |
| GO:0002098 | 4 | Up | 5.60e-02 | 4.53e-01 |
| GO:0002097 | 4 | Up | 5.60e-02 | 4.53e-01 |
| GO:0006206 | 6 | Down | 5.74e-02 | 4.61e-01 |
| GO:0044085 | 153 | Down | 6.23e-02 | 4.91e-01 |
| GO:0032501 | 8 | Up | 6.24e-02 | 4.91e-01 |
| GO:0006511 | 71 | Down | 6.47e-02 | 4.91e-01 |
| GO:0009152 | 17 | Up | 6.53e-02 | 4.91e-01 |
| GO:0006098 | 9 | Down | 6.67e-02 | 4.91e-01 |
| GO:0046365 | 9 | Down | 6.67e-02 | 4.91e-01 |
| GO:0006740 | 9 | Down | 6.67e-02 | 4.91e-01 |
| GO:0006007 | 9 | Down | 6.67e-02 | 4.91e-01 |
| GO:0006739 | 9 | Down | 6.67e-02 | 4.91e-01 |
| GO:0019320 | 9 | Down | 6.67e-02 | 4.91e-01 |
| GO:0030154 | 7 | Up | 6.69e-02 | 4.91e-01 |
| GO:0018394 | 4 | Up | 6.91e-02 | 4.91e-01 |
| GO:0006475 | 4 | Up | 6.91e-02 | 4.91e-01 |
| GO:0018393 | 4 | Up | 6.91e-02 | 4.91e-01 |
| GO:0016573 | 4 | Up | 6.91e-02 | 4.91e-01 |
| GO:0032784 | 3 | Down | 6.96e-02 | 4.91e-01 |
| GO:0019362 | 10 | Down | 7.02e-02 | 4.91e-01 |
| GO:0046496 | 10 | Down | 7.02e-02 | 4.91e-01 |
| GO:0043933 | 107 | Down | 7.11e-02 | 4.93e-01 |
| GO:0006090 | 24 | Down | 7.24e-02 | 4.98e-01 |
| GO:0022618 | 29 | Down | 7.30e-02 | 4.99e-01 |
| GO:0009628 | 22 | Down | 7.36e-02 | 5.00e-01 |
| GO:0010608 | 25 | Down | 7.79e-02 | 5.23e-01 |
| GO:0042254 | 80 | Down | 7.84e-02 | 5.23e-01 |
| GO:0045017 | 17 | Up | 7.87e-02 | 5.23e-01 |
| GO:0031338 | 14 | Up | 8.21e-02 | 5.31e-01 |
| GO:0006890 | 6 | Up | 8.25e-02 | 5.31e-01 |
| GO:0019941 | 73 | Down | 8.29e-02 | 5.31e-01 |
| GO:0043632 | 73 | Down | 8.29e-02 | 5.31e-01 |
| GO:0009060 | 17 | Up | 8.51e-02 | 5.31e-01 |
| GO:0006099 | 17 | Up | 8.51e-02 | 5.31e-01 |
| GO:0006813 | 4 | Up | 8.61e-02 | 5.31e-01 |
| GO:0051603 | 76 | Down | 8.70e-02 | 5.31e-01 |
| GO:0044257 | 76 | Down | 8.70e-02 | 5.31e-01 |
| GO:0045859 | 4 | Up | 8.71e-02 | 5.31e-01 |
| GO:0051338 | 4 | Up | 8.71e-02 | 5.31e-01 |
| GO:0043549 | 4 | Up | 8.71e-02 | 5.31e-01 |
| GO:1901607 | 11 | Down | 8.71e-02 | 5.31e-01 |
| GO:0000154 | 5 | Down | 8.85e-02 | 5.31e-01 |
| GO:0044743 | 6 | Down | 8.90e-02 | 5.31e-01 |
| GO:0043248 | 8 | Down | 8.97e-02 | 5.31e-01 |
| GO:0042493 | 51 | Down | 9.02e-02 | 5.31e-01 |
| GO:0007005 | 14 | Down | 9.28e-02 | 5.31e-01 |
| GO:0072655 | 14 | Down | 9.28e-02 | 5.31e-01 |
| GO:0070585 | 14 | Down | 9.28e-02 | 5.31e-01 |
| GO:0006626 | 14 | Down | 9.28e-02 | 5.31e-01 |
| GO:0044272 | 14 | Up | 9.45e-02 | 5.31e-01 |
| GO:0018345 | 8 | Up | 9.52e-02 | 5.31e-01 |
| GO:0006760 | 5 | Down | 9.58e-02 | 5.31e-01 |
| GO:0048518 | 11 | Down | 9.62e-02 | 5.31e-01 |
| GO:0006338 | 4 | Down | 9.62e-02 | 5.31e-01 |
| GO:0043631 | 6 | Up | 9.75e-02 | 5.31e-01 |
| GO:0009260 | 18 | Up | 9.81e-02 | 5.31e-01 |
| GO:0051301 | 23 | Up | 9.86e-02 | 5.31e-01 |
| GO:0034622 | 64 | Down | 9.93e-02 | 5.31e-01 |
| GO:0006473 | 6 | Up | 9.94e-02 | 5.31e-01 |
| GO:0009890 | 5 | Down | 9.97e-02 | 5.31e-01 |
| GO:0031327 | 5 | Down | 9.97e-02 | 5.31e-01 |
| GO:0006166 | 2 | Down | 1.00e-01 | 5.31e-01 |
| GO:0043101 | 2 | Down | 1.00e-01 | 5.31e-01 |
| GO:0043174 | 2 | Down | 1.00e-01 | 5.31e-01 |
| GO:0006848 | 2 | Down | 1.00e-01 | 5.31e-01 |
| GO:0097354 | 6 | Up | 1.03e-01 | 5.35e-01 |
| GO:0018342 | 6 | Up | 1.03e-01 | 5.35e-01 |
| GO:0009266 | 21 | Down | 1.03e-01 | 5.35e-01 |
| GO:0046474 | 16 | Up | 1.04e-01 | 5.35e-01 |
| GO:0006414 | 20 | Down | 1.04e-01 | 5.35e-01 |
| GO:0016043 | 183 | Down | 1.04e-01 | 5.35e-01 |
| GO:0006066 | 7 | Down | 1.05e-01 | 5.36e-01 |
| GO:0046390 | 19 | Up | 1.06e-01 | 5.39e-01 |
| GO:0034968 | 4 | Down | 1.10e-01 | 5.52e-01 |
| GO:0006754 | 7 | Up | 1.12e-01 | 5.52e-01 |
| GO:0015985 | 7 | Up | 1.12e-01 | 5.52e-01 |
| GO:0015986 | 7 | Up | 1.12e-01 | 5.52e-01 |
| GO:0006325 | 29 | Down | 1.12e-01 | 5.52e-01 |
| GO:0043241 | 6 | Up | 1.12e-01 | 5.52e-01 |
| GO:1901137 | 55 | Up | 1.13e-01 | 5.52e-01 |
| GO:0042594 | 3 | Down | 1.13e-01 | 5.52e-01 |
| GO:0008033 | 37 | Up | 1.16e-01 | 5.62e-01 |
| GO:0000278 | 13 | Up | 1.21e-01 | 5.71e-01 |
| GO:0009112 | 7 | Down | 1.22e-01 | 5.71e-01 |
| GO:0015980 | 24 | Up | 1.23e-01 | 5.71e-01 |
| GO:2000113 | 4 | Down | 1.24e-01 | 5.71e-01 |
| GO:0010558 | 4 | Down | 1.24e-01 | 5.71e-01 |
| GO:0045892 | 4 | Down | 1.24e-01 | 5.71e-01 |
| GO:1902679 | 4 | Down | 1.24e-01 | 5.71e-01 |
| GO:0051253 | 4 | Down | 1.24e-01 | 5.71e-01 |
| GO:0051172 | 4 | Down | 1.24e-01 | 5.71e-01 |
| GO:0045934 | 4 | Down | 1.24e-01 | 5.71e-01 |
| GO:0048869 | 8 | Up | 1.25e-01 | 5.72e-01 |
| GO:0042221 | 68 | Down | 1.26e-01 | 5.75e-01 |
| GO:0006790 | 20 | Up | 1.27e-01 | 5.77e-01 |
| GO:0009145 | 9 | Up | 1.29e-01 | 5.78e-01 |
| GO:0090151 | 3 | Down | 1.30e-01 | 5.78e-01 |
| GO:0007007 | 3 | Down | 1.30e-01 | 5.78e-01 |
| GO:0045039 | 3 | Down | 1.30e-01 | 5.78e-01 |
| GO:0007006 | 3 | Down | 1.30e-01 | 5.78e-01 |
| GO:0009147 | 3 | Up | 1.32e-01 | 5.78e-01 |
| GO:0006730 | 4 | Down | 1.32e-01 | 5.78e-01 |
| GO:0006164 | 19 | Up | 1.32e-01 | 5.78e-01 |
| GO:0007049 | 36 | Up | 1.33e-01 | 5.78e-01 |
| GO:0019856 | 5 | Down | 1.35e-01 | 5.78e-01 |
| GO:0006207 | 5 | Down | 1.35e-01 | 5.78e-01 |
| GO:0046112 | 5 | Down | 1.35e-01 | 5.78e-01 |
| GO:1902580 | 33 | Down | 1.36e-01 | 5.78e-01 |
| GO:0043094 | 3 | Down | 1.38e-01 | 5.78e-01 |
| GO:0034982 | 2 | Down | 1.38e-01 | 5.78e-01 |
| GO:0007059 | 8 | Up | 1.38e-01 | 5.78e-01 |
| GO:0072524 | 12 | Down | 1.38e-01 | 5.78e-01 |
| GO:0006417 | 22 | Down | 1.38e-01 | 5.78e-01 |
| GO:0009108 | 24 | Up | 1.39e-01 | 5.79e-01 |
| GO:0006518 | 11 | Down | 1.40e-01 | 5.81e-01 |
| GO:0006379 | 4 | Up | 1.40e-01 | 5.81e-01 |
| GO:0044265 | 97 | Down | 1.42e-01 | 5.81e-01 |
| GO:0045333 | 23 | Up | 1.42e-01 | 5.81e-01 |
| GO:0035890 | 12 | Up | 1.46e-01 | 5.96e-01 |
| GO:0006875 | 4 | Up | 1.47e-01 | 5.96e-01 |
| GO:0055065 | 4 | Up | 1.47e-01 | 5.96e-01 |
| GO:0006839 | 18 | Down | 1.48e-01 | 5.96e-01 |
| GO:0009142 | 10 | Up | 1.49e-01 | 5.96e-01 |
| GO:0072594 | 32 | Down | 1.49e-01 | 5.96e-01 |
| GO:0009408 | 20 | Down | 1.50e-01 | 5.96e-01 |
| GO:0065002 | 11 | Down | 1.51e-01 | 5.98e-01 |
| GO:0018344 | 3 | Up | 1.53e-01 | 6.02e-01 |
| GO:0006605 | 34 | Down | 1.53e-01 | 6.02e-01 |
| GO:0065003 | 74 | Down | 1.54e-01 | 6.02e-01 |
| GO:0008535 | 1 | Up | 1.55e-01 | 6.05e-01 |
| GO:0007015 | 4 | Down | 1.56e-01 | 6.05e-01 |
| GO:0006996 | 110 | Down | 1.57e-01 | 6.06e-01 |
| GO:0043648 | 10 | Down | 1.58e-01 | 6.09e-01 |
| GO:0046129 | 17 | Up | 1.59e-01 | 6.09e-01 |
| GO:0042451 | 17 | Up | 1.59e-01 | 6.09e-01 |
| GO:1903047 | 12 | Up | 1.60e-01 | 6.10e-01 |
| GO:0090150 | 11 | Down | 1.62e-01 | 6.12e-01 |
| GO:0072657 | 11 | Down | 1.62e-01 | 6.12e-01 |
| GO:0006378 | 5 | Up | 1.67e-01 | 6.22e-01 |
| GO:0031124 | 5 | Up | 1.67e-01 | 6.22e-01 |
| GO:0009452 | 6 | Down | 1.69e-01 | 6.22e-01 |
| GO:0036260 | 6 | Down | 1.69e-01 | 6.22e-01 |
| GO:0033013 | 8 | Up | 1.70e-01 | 6.22e-01 |
| GO:0042440 | 8 | Up | 1.70e-01 | 6.22e-01 |
| GO:0042168 | 8 | Up | 1.70e-01 | 6.22e-01 |
| GO:0006778 | 8 | Up | 1.70e-01 | 6.22e-01 |
| GO:0009057 | 101 | Down | 1.71e-01 | 6.26e-01 |
| GO:0010629 | 6 | Down | 1.76e-01 | 6.42e-01 |
| GO:0006410 | 5 | Up | 1.78e-01 | 6.43e-01 |
| GO:0008643 | 4 | Up | 1.80e-01 | 6.43e-01 |
| GO:0000394 | 2 | Up | 1.83e-01 | 6.43e-01 |
| GO:0006388 | 2 | Up | 1.83e-01 | 6.43e-01 |
| GO:0046165 | 6 | Down | 1.84e-01 | 6.43e-01 |
| GO:0043603 | 15 | Down | 1.85e-01 | 6.43e-01 |
| GO:0016482 | 66 | Down | 1.85e-01 | 6.43e-01 |
| GO:0006665 | 2 | Up | 1.85e-01 | 6.43e-01 |
| GO:0006817 | 22 | Down | 1.87e-01 | 6.43e-01 |
| GO:0051258 | 8 | Up | 1.88e-01 | 6.43e-01 |
| GO:0051130 | 3 | Down | 1.88e-01 | 6.43e-01 |
| GO:0042777 | 1 | Up | 1.89e-01 | 6.43e-01 |
| GO:0051246 | 31 | Down | 1.89e-01 | 6.43e-01 |
| GO:0071496 | 5 | Down | 1.91e-01 | 6.43e-01 |
| GO:0031668 | 5 | Down | 1.91e-01 | 6.43e-01 |
| GO:0015937 | 4 | Up | 1.93e-01 | 6.43e-01 |
| GO:0033866 | 4 | Up | 1.93e-01 | 6.43e-01 |
| GO:0034032 | 4 | Up | 1.93e-01 | 6.43e-01 |
| GO:0034033 | 4 | Up | 1.93e-01 | 6.43e-01 |
| GO:0033875 | 4 | Up | 1.93e-01 | 6.43e-01 |
| GO:0015936 | 4 | Up | 1.93e-01 | 6.43e-01 |
| GO:0033865 | 4 | Up | 1.93e-01 | 6.43e-01 |
| GO:0034030 | 4 | Up | 1.93e-01 | 6.43e-01 |
| GO:0016568 | 18 | Down | 1.93e-01 | 6.43e-01 |
| GO:0042181 | 6 | Up | 1.97e-01 | 6.44e-01 |
| GO:1901661 | 6 | Up | 1.97e-01 | 6.44e-01 |
| GO:0042180 | 6 | Up | 1.97e-01 | 6.44e-01 |
| GO:1901663 | 6 | Up | 1.97e-01 | 6.44e-01 |
| GO:0035891 | 11 | Up | 1.97e-01 | 6.44e-01 |
| GO:0006364 | 48 | Down | 1.98e-01 | 6.44e-01 |
| GO:0016072 | 48 | Down | 1.98e-01 | 6.44e-01 |
| GO:0043484 | 2 | Down | 1.99e-01 | 6.44e-01 |
| GO:0015074 | 3 | Down | 2.00e-01 | 6.44e-01 |
| GO:0009148 | 2 | Up | 2.00e-01 | 6.44e-01 |
| GO:0051235 | 3 | Up | 2.01e-01 | 6.44e-01 |
| GO:0045185 | 3 | Up | 2.01e-01 | 6.44e-01 |
| GO:0044248 | 137 | Down | 2.08e-01 | 6.55e-01 |
| GO:0032269 | 1 | Up | 2.08e-01 | 6.55e-01 |
| GO:0051248 | 1 | Up | 2.08e-01 | 6.55e-01 |
| GO:0000413 | 10 | Down | 2.09e-01 | 6.55e-01 |
| GO:0018208 | 10 | Down | 2.09e-01 | 6.55e-01 |
| GO:0030163 | 86 | Down | 2.09e-01 | 6.55e-01 |
| GO:0010256 | 4 | Up | 2.10e-01 | 6.55e-01 |
| GO:0043624 | 5 | Up | 2.11e-01 | 6.55e-01 |
| GO:0006415 | 5 | Up | 2.11e-01 | 6.55e-01 |
| GO:0022607 | 83 | Down | 2.11e-01 | 6.55e-01 |
| GO:0006260 | 47 | Up | 2.16e-01 | 6.67e-01 |
| GO:0042273 | 16 | Down | 2.16e-01 | 6.67e-01 |
| GO:0009127 | 11 | Up | 2.18e-01 | 6.69e-01 |
| GO:0009168 | 11 | Up | 2.18e-01 | 6.69e-01 |
| GO:1901615 | 13 | Down | 2.20e-01 | 6.71e-01 |
| GO:0010564 | 17 | Up | 2.23e-01 | 6.79e-01 |
| GO:0033365 | 33 | Down | 2.24e-01 | 6.79e-01 |
| GO:0008610 | 53 | Up | 2.26e-01 | 6.79e-01 |
| GO:0016071 | 100 | Down | 2.26e-01 | 6.79e-01 |
| GO:0019752 | 129 | Down | 2.26e-01 | 6.79e-01 |
| GO:0000003 | 3 | Down | 2.30e-01 | 6.86e-01 |
| GO:0006986 | 12 | Down | 2.31e-01 | 6.86e-01 |
| GO:0035966 | 12 | Down | 2.31e-01 | 6.86e-01 |
| GO:0019751 | 3 | Down | 2.31e-01 | 6.86e-01 |
| GO:0009132 | 5 | Up | 2.34e-01 | 6.91e-01 |
| GO:0071976 | 4 | Up | 2.37e-01 | 6.98e-01 |
| GO:0000956 | 5 | Down | 2.39e-01 | 6.98e-01 |
| GO:0043436 | 130 | Down | 2.39e-01 | 6.98e-01 |
| GO:0006082 | 130 | Down | 2.39e-01 | 6.98e-01 |
| GO:0006520 | 75 | Down | 2.40e-01 | 6.98e-01 |
| GO:0043650 | 3 | Down | 2.42e-01 | 6.99e-01 |
| GO:0015693 | 1 | Up | 2.42e-01 | 6.99e-01 |
| GO:0071806 | 16 | Down | 2.42e-01 | 6.99e-01 |
| GO:0051186 | 45 | Up | 2.46e-01 | 7.01e-01 |
| GO:0033043 | 19 | Up | 2.46e-01 | 7.01e-01 |
| GO:0070646 | 11 | Down | 2.46e-01 | 7.01e-01 |
| GO:0016579 | 11 | Down | 2.46e-01 | 7.01e-01 |
| GO:1901264 | 5 | Up | 2.47e-01 | 7.01e-01 |
| GO:0051049 | 27 | Up | 2.49e-01 | 7.03e-01 |
| GO:0032879 | 27 | Up | 2.49e-01 | 7.03e-01 |
| GO:0034227 | 3 | Up | 2.51e-01 | 7.04e-01 |
| GO:0022402 | 21 | Up | 2.52e-01 | 7.04e-01 |
| GO:0042439 | 4 | Down | 2.53e-01 | 7.04e-01 |
| GO:0046470 | 4 | Down | 2.53e-01 | 7.04e-01 |
| GO:0006656 | 4 | Down | 2.53e-01 | 7.04e-01 |
| GO:0006367 | 8 | Up | 2.54e-01 | 7.04e-01 |
| GO:0006091 | 41 | Down | 2.54e-01 | 7.04e-01 |
| GO:0071103 | 19 | Down | 2.55e-01 | 7.04e-01 |
| GO:0031365 | 4 | Down | 2.61e-01 | 7.17e-01 |
| GO:0006275 | 3 | Up | 2.61e-01 | 7.17e-01 |
| GO:0010033 | 13 | Down | 2.65e-01 | 7.25e-01 |
| GO:0015698 | 23 | Down | 2.66e-01 | 7.25e-01 |
| GO:0015858 | 3 | Up | 2.72e-01 | 7.37e-01 |
| GO:0006487 | 2 | Up | 2.73e-01 | 7.37e-01 |
| GO:0006820 | 41 | Down | 2.74e-01 | 7.37e-01 |
| GO:0010467 | 524 | Down | 2.75e-01 | 7.37e-01 |
| GO:0007186 | 4 | Up | 2.77e-01 | 7.37e-01 |
| GO:0002682 | 6 | Down | 2.80e-01 | 7.37e-01 |
| GO:0050776 | 6 | Down | 2.80e-01 | 7.37e-01 |
| GO:0070085 | 7 | Up | 2.80e-01 | 7.37e-01 |
| GO:0006486 | 7 | Up | 2.80e-01 | 7.37e-01 |
| GO:0009100 | 7 | Up | 2.80e-01 | 7.37e-01 |
| GO:0009101 | 7 | Up | 2.80e-01 | 7.37e-01 |
| GO:0043413 | 7 | Up | 2.80e-01 | 7.37e-01 |
| GO:0008616 | 4 | Down | 2.81e-01 | 7.37e-01 |
| GO:0046116 | 4 | Down | 2.81e-01 | 7.37e-01 |
| GO:0070647 | 29 | Down | 2.82e-01 | 7.40e-01 |
| GO:0015914 | 4 | Down | 2.86e-01 | 7.46e-01 |
| GO:0019220 | 27 | Up | 2.95e-01 | 7.61e-01 |
| GO:0051174 | 27 | Up | 2.95e-01 | 7.61e-01 |
| GO:0006397 | 93 | Down | 2.95e-01 | 7.61e-01 |
| GO:0007067 | 11 | Up | 2.95e-01 | 7.61e-01 |
| GO:0030029 | 10 | Down | 2.96e-01 | 7.61e-01 |
| GO:0071824 | 11 | Down | 2.97e-01 | 7.61e-01 |
| GO:0065004 | 11 | Down | 2.97e-01 | 7.61e-01 |
| GO:1901605 | 24 | Down | 3.01e-01 | 7.61e-01 |
| GO:0006743 | 5 | Up | 3.02e-01 | 7.61e-01 |
| GO:0006744 | 5 | Up | 3.02e-01 | 7.61e-01 |
| GO:0072522 | 22 | Up | 3.05e-01 | 7.61e-01 |
| GO:0050658 | 7 | Down | 3.06e-01 | 7.61e-01 |
| GO:0051236 | 7 | Down | 3.06e-01 | 7.61e-01 |
| GO:0006403 | 7 | Down | 3.06e-01 | 7.61e-01 |
| GO:0050657 | 7 | Down | 3.06e-01 | 7.61e-01 |
| GO:0006281 | 50 | Up | 3.06e-01 | 7.61e-01 |
| GO:0006081 | 6 | Up | 3.07e-01 | 7.61e-01 |
| GO:0001522 | 17 | Up | 3.08e-01 | 7.61e-01 |
| GO:0030001 | 16 | Up | 3.08e-01 | 7.61e-01 |
| GO:0006118 | 4 | Up | 3.10e-01 | 7.61e-01 |
| GO:0009124 | 12 | Up | 3.12e-01 | 7.61e-01 |
| GO:0009156 | 12 | Up | 3.12e-01 | 7.61e-01 |
| GO:0010468 | 116 | Down | 3.13e-01 | 7.61e-01 |
| GO:0006767 | 8 | Up | 3.13e-01 | 7.61e-01 |
| GO:0006766 | 8 | Up | 3.13e-01 | 7.61e-01 |
| GO:0042364 | 8 | Up | 3.13e-01 | 7.61e-01 |
| GO:0009110 | 8 | Up | 3.13e-01 | 7.61e-01 |
| GO:0006873 | 11 | Up | 3.14e-01 | 7.61e-01 |
| GO:0030003 | 11 | Up | 3.14e-01 | 7.61e-01 |
| GO:0044267 | 562 | Down | 3.16e-01 | 7.62e-01 |
| GO:0008654 | 25 | Up | 3.16e-01 | 7.62e-01 |
| GO:0031324 | 6 | Down | 3.20e-01 | 7.69e-01 |
| GO:0044262 | 11 | Down | 3.23e-01 | 7.74e-01 |
| GO:0006631 | 29 | Up | 3.25e-01 | 7.74e-01 |
| GO:0030488 | 4 | Up | 3.25e-01 | 7.74e-01 |
| GO:0009991 | 7 | Down | 3.25e-01 | 7.74e-01 |
| GO:0044699 | 809 | Down | 3.27e-01 | 7.77e-01 |
| GO:0006420 | 3 | Up | 3.29e-01 | 7.79e-01 |
| GO:0060255 | 128 | Down | 3.30e-01 | 7.80e-01 |
| GO:0072330 | 21 | Up | 3.34e-01 | 7.86e-01 |
| GO:0000350 | 3 | Down | 3.35e-01 | 7.86e-01 |
| GO:0051169 | 25 | Down | 3.37e-01 | 7.86e-01 |
| GO:0006913 | 25 | Down | 3.37e-01 | 7.86e-01 |
| GO:0006575 | 13 | Down | 3.38e-01 | 7.86e-01 |
| GO:0032012 | 3 | Up | 3.39e-01 | 7.86e-01 |
| GO:0030433 | 19 | Up | 3.42e-01 | 7.86e-01 |
| GO:0043412 | 249 | Up | 3.42e-01 | 7.86e-01 |
| GO:0006468 | 91 | Up | 3.44e-01 | 7.86e-01 |
| GO:0048523 | 10 | Down | 3.44e-01 | 7.86e-01 |
| GO:0009892 | 8 | Down | 3.45e-01 | 7.86e-01 |
| GO:0046034 | 12 | Up | 3.46e-01 | 7.86e-01 |
| GO:0006629 | 86 | Up | 3.46e-01 | 7.86e-01 |
| GO:0042559 | 6 | Down | 3.47e-01 | 7.86e-01 |
| GO:0009451 | 43 | Up | 3.47e-01 | 7.86e-01 |
| GO:0020027 | 7 | Up | 3.47e-01 | 7.86e-01 |
| GO:0042540 | 7 | Up | 3.47e-01 | 7.86e-01 |
| GO:0042398 | 11 | Down | 3.49e-01 | 7.86e-01 |
| GO:0040011 | 58 | Up | 3.49e-01 | 7.86e-01 |
| GO:1901617 | 9 | Down | 3.49e-01 | 7.86e-01 |
| GO:0000226 | 5 | Up | 3.51e-01 | 7.88e-01 |
| GO:0006396 | 207 | Down | 3.53e-01 | 7.90e-01 |
| GO:0006401 | 10 | Down | 3.54e-01 | 7.90e-01 |
| GO:0030150 | 3 | Down | 3.54e-01 | 7.90e-01 |
| GO:0006508 | 138 | Down | 3.55e-01 | 7.90e-01 |
| GO:0002376 | 7 | Down | 3.58e-01 | 7.95e-01 |
| GO:0006544 | 4 | Up | 3.64e-01 | 7.95e-01 |
| GO:0006974 | 51 | Up | 3.67e-01 | 7.95e-01 |
| GO:0051128 | 22 | Up | 3.70e-01 | 7.95e-01 |
| GO:0044238 | 1268 | Down | 3.71e-01 | 7.95e-01 |
| GO:0006979 | 10 | Down | 3.75e-01 | 7.95e-01 |
| GO:0032984 | 8 | Up | 3.77e-01 | 7.95e-01 |
| GO:0022411 | 8 | Up | 3.77e-01 | 7.95e-01 |
| GO:0006825 | 3 | Up | 3.79e-01 | 7.95e-01 |
| GO:1901564 | 179 | Down | 3.79e-01 | 7.95e-01 |
| GO:0046395 | 7 | Up | 3.81e-01 | 7.95e-01 |
| GO:0044282 | 7 | Up | 3.81e-01 | 7.95e-01 |
| GO:0016054 | 7 | Up | 3.81e-01 | 7.95e-01 |
| GO:0006733 | 15 | Down | 3.81e-01 | 7.95e-01 |
| GO:0044260 | 985 | Down | 3.82e-01 | 7.95e-01 |
| GO:0044106 | 8 | Down | 3.83e-01 | 7.95e-01 |
| GO:0009308 | 8 | Down | 3.83e-01 | 7.95e-01 |
| GO:0006576 | 8 | Down | 3.83e-01 | 7.95e-01 |
| GO:0043086 | 3 | Down | 3.83e-01 | 7.95e-01 |
| GO:0044092 | 3 | Down | 3.83e-01 | 7.95e-01 |
| GO:0008213 | 8 | Down | 3.86e-01 | 7.95e-01 |
| GO:0006479 | 8 | Down | 3.86e-01 | 7.95e-01 |
| GO:0044417 | 4 | Up | 3.86e-01 | 7.95e-01 |
| GO:0042000 | 4 | Up | 3.86e-01 | 7.95e-01 |
| GO:0051836 | 4 | Up | 3.86e-01 | 7.95e-01 |
| GO:0044766 | 4 | Up | 3.86e-01 | 7.95e-01 |
| GO:1902579 | 4 | Up | 3.86e-01 | 7.95e-01 |
| GO:0051808 | 4 | Up | 3.86e-01 | 7.95e-01 |
| GO:0044053 | 4 | Up | 3.86e-01 | 7.95e-01 |
| GO:0010638 | 2 | Down | 3.86e-01 | 7.95e-01 |
| GO:0031334 | 2 | Down | 3.86e-01 | 7.95e-01 |
| GO:0051495 | 2 | Down | 3.86e-01 | 7.95e-01 |
| GO:0030838 | 2 | Down | 3.86e-01 | 7.95e-01 |
| GO:0032273 | 2 | Down | 3.86e-01 | 7.95e-01 |
| GO:0045010 | 2 | Down | 3.86e-01 | 7.95e-01 |
| GO:0019222 | 152 | Down | 3.88e-01 | 7.95e-01 |
| GO:0006750 | 3 | Up | 3.89e-01 | 7.95e-01 |
| GO:0019184 | 3 | Up | 3.89e-01 | 7.95e-01 |
| GO:0043043 | 3 | Up | 3.89e-01 | 7.95e-01 |
| GO:0044281 | 231 | Down | 3.91e-01 | 7.96e-01 |
| GO:0030261 | 2 | Down | 3.92e-01 | 7.96e-01 |
| GO:0006402 | 7 | Down | 3.93e-01 | 7.96e-01 |
| GO:0051260 | 3 | Down | 3.93e-01 | 7.96e-01 |
| GO:0019538 | 628 | Down | 4.00e-01 | 7.97e-01 |
| GO:1901135 | 97 | Up | 4.00e-01 | 7.97e-01 |
| GO:0046131 | 2 | Up | 4.00e-01 | 7.97e-01 |
| GO:0009218 | 2 | Up | 4.00e-01 | 7.97e-01 |
| GO:0009220 | 2 | Up | 4.00e-01 | 7.97e-01 |
| GO:0046132 | 2 | Up | 4.00e-01 | 7.97e-01 |
| GO:0046134 | 2 | Up | 4.00e-01 | 7.97e-01 |
| GO:0006213 | 2 | Up | 4.00e-01 | 7.97e-01 |
| GO:0019439 | 37 | Down | 4.01e-01 | 7.97e-01 |
| GO:0006633 | 19 | Up | 4.03e-01 | 7.99e-01 |
| GO:0043087 | 18 | Up | 4.06e-01 | 8.00e-01 |
| GO:0033124 | 18 | Up | 4.06e-01 | 8.00e-01 |
| GO:1901070 | 2 | Up | 4.07e-01 | 8.00e-01 |
| GO:0055086 | 85 | Down | 4.07e-01 | 8.00e-01 |
| GO:0006897 | 7 | Down | 4.08e-01 | 8.00e-01 |
| GO:0044255 | 73 | Up | 4.11e-01 | 8.05e-01 |
| GO:0006357 | 10 | Down | 4.14e-01 | 8.07e-01 |
| GO:0006400 | 19 | Up | 4.15e-01 | 8.07e-01 |
| GO:0046700 | 39 | Down | 4.17e-01 | 8.07e-01 |
| GO:0044270 | 39 | Down | 4.17e-01 | 8.07e-01 |
| GO:1901361 | 39 | Down | 4.17e-01 | 8.07e-01 |
| GO:0006366 | 21 | Up | 4.17e-01 | 8.07e-01 |
| GO:0055082 | 12 | Up | 4.20e-01 | 8.08e-01 |
| GO:0043038 | 40 | Down | 4.20e-01 | 8.08e-01 |
| GO:0043039 | 40 | Down | 4.20e-01 | 8.08e-01 |
| GO:0044237 | 1238 | Down | 4.25e-01 | 8.16e-01 |
| GO:0009438 | 2 | Up | 4.26e-01 | 8.16e-01 |
| GO:0032508 | 6 | Down | 4.28e-01 | 8.17e-01 |
| GO:0032392 | 6 | Down | 4.28e-01 | 8.17e-01 |
| GO:0010605 | 7 | Down | 4.33e-01 | 8.24e-01 |
| GO:0016310 | 99 | Up | 4.34e-01 | 8.24e-01 |
| GO:0043170 | 1043 | Down | 4.35e-01 | 8.24e-01 |
| GO:0071897 | 1 | Up | 4.35e-01 | 8.24e-01 |
| GO:0006265 | 3 | Down | 4.38e-01 | 8.28e-01 |
| GO:0006434 | 3 | Down | 4.44e-01 | 8.37e-01 |
| GO:0009084 | 3 | Down | 4.48e-01 | 8.40e-01 |
| GO:0048878 | 14 | Up | 4.50e-01 | 8.40e-01 |
| GO:0034655 | 35 | Down | 4.51e-01 | 8.40e-01 |
| GO:1901700 | 3 | Up | 4.55e-01 | 8.40e-01 |
| GO:0010035 | 3 | Up | 4.55e-01 | 8.40e-01 |
| GO:0000302 | 3 | Up | 4.55e-01 | 8.40e-01 |
| GO:0006732 | 37 | Up | 4.56e-01 | 8.40e-01 |
| GO:0006412 | 231 | Down | 4.57e-01 | 8.40e-01 |
| GO:0051806 | 42 | Up | 4.57e-01 | 8.40e-01 |
| GO:0030260 | 42 | Up | 4.57e-01 | 8.40e-01 |
| GO:0036211 | 206 | Up | 4.58e-01 | 8.40e-01 |
| GO:0006464 | 206 | Up | 4.58e-01 | 8.40e-01 |
| GO:0052192 | 54 | Up | 4.61e-01 | 8.40e-01 |
| GO:0052126 | 54 | Up | 4.61e-01 | 8.40e-01 |
| GO:0009066 | 4 | Down | 4.61e-01 | 8.40e-01 |
| GO:0006298 | 8 | Up | 4.61e-01 | 8.40e-01 |
| GO:0015749 | 2 | Up | 4.61e-01 | 8.40e-01 |
| GO:0008645 | 2 | Up | 4.61e-01 | 8.40e-01 |
| GO:0051726 | 29 | Up | 4.65e-01 | 8.42e-01 |
| GO:0006269 | 2 | Up | 4.69e-01 | 8.42e-01 |
| GO:0071704 | 1299 | Down | 4.70e-01 | 8.42e-01 |
| GO:0000027 | 8 | Down | 4.74e-01 | 8.42e-01 |
| GO:0048193 | 26 | Up | 4.75e-01 | 8.42e-01 |
| GO:0006261 | 27 | Up | 4.75e-01 | 8.42e-01 |
| GO:0009263 | 4 | Up | 4.76e-01 | 8.42e-01 |
| GO:0009987 | 1474 | Down | 4.78e-01 | 8.42e-01 |
| GO:0031326 | 111 | Down | 4.78e-01 | 8.42e-01 |
| GO:0009889 | 111 | Down | 4.78e-01 | 8.42e-01 |
| GO:0016070 | 365 | Down | 4.80e-01 | 8.42e-01 |
| GO:0051674 | 10 | Up | 4.83e-01 | 8.42e-01 |
| GO:0048870 | 10 | Up | 4.83e-01 | 8.42e-01 |
| GO:0090407 | 64 | Up | 4.83e-01 | 8.42e-01 |
| GO:0032787 | 53 | Down | 4.87e-01 | 8.42e-01 |
| GO:0032318 | 15 | Up | 4.89e-01 | 8.42e-01 |
| GO:0080090 | 141 | Down | 4.92e-01 | 8.42e-01 |
| GO:0048522 | 8 | Down | 4.98e-01 | 8.42e-01 |
| GO:0050790 | 27 | Up | 4.99e-01 | 8.42e-01 |
| GO:0065009 | 27 | Up | 4.99e-01 | 8.42e-01 |
| GO:0008652 | 20 | Down | 4.99e-01 | 8.42e-01 |
| GO:0033036 | 161 | Down | 4.99e-01 | 8.42e-01 |
| GO:0030036 | 8 | Down | 5.00e-01 | 8.42e-01 |
| GO:0060627 | 23 | Up | 5.00e-01 | 8.42e-01 |
| GO:0009163 | 22 | Up | 5.02e-01 | 8.42e-01 |
| GO:0042455 | 22 | Up | 5.02e-01 | 8.42e-01 |
| GO:0010556 | 110 | Down | 5.02e-01 | 8.42e-01 |
| GO:2000112 | 110 | Down | 5.02e-01 | 8.42e-01 |
| GO:0006413 | 48 | Down | 5.03e-01 | 8.42e-01 |
| GO:1901565 | 31 | Down | 5.06e-01 | 8.42e-01 |
| GO:0009167 | 17 | Up | 5.07e-01 | 8.42e-01 |
| GO:0009126 | 17 | Up | 5.07e-01 | 8.42e-01 |
| GO:0009150 | 40 | Up | 5.09e-01 | 8.42e-01 |
| GO:0016226 | 4 | Up | 5.09e-01 | 8.42e-01 |
| GO:0031163 | 4 | Up | 5.09e-01 | 8.42e-01 |
| GO:0015672 | 24 | Up | 5.13e-01 | 8.42e-01 |
| GO:0061024 | 17 | Down | 5.15e-01 | 8.42e-01 |
| GO:0006536 | 5 | Down | 5.16e-01 | 8.42e-01 |
| GO:0006826 | 3 | Down | 5.16e-01 | 8.42e-01 |
| GO:0015684 | 3 | Down | 5.16e-01 | 8.42e-01 |
| GO:1901136 | 23 | Down | 5.17e-01 | 8.42e-01 |
| GO:0017038 | 19 | Down | 5.19e-01 | 8.42e-01 |
| GO:0006284 | 4 | Down | 5.20e-01 | 8.42e-01 |
| GO:0007169 | 3 | Up | 5.20e-01 | 8.42e-01 |
| GO:0007167 | 3 | Up | 5.20e-01 | 8.42e-01 |
| GO:0006352 | 14 | Up | 5.21e-01 | 8.42e-01 |
| GO:0098662 | 17 | Up | 5.22e-01 | 8.42e-01 |
| GO:0098655 | 17 | Up | 5.22e-01 | 8.42e-01 |
| GO:0098660 | 17 | Up | 5.22e-01 | 8.42e-01 |
| GO:0006268 | 2 | Down | 5.31e-01 | 8.42e-01 |
| GO:0007018 | 19 | Down | 5.31e-01 | 8.42e-01 |
| GO:0045047 | 7 | Down | 5.32e-01 | 8.42e-01 |
| GO:0072599 | 7 | Down | 5.32e-01 | 8.42e-01 |
| GO:0006612 | 7 | Down | 5.32e-01 | 8.42e-01 |
| GO:0072523 | 19 | Down | 5.32e-01 | 8.42e-01 |
| GO:0009164 | 19 | Down | 5.32e-01 | 8.42e-01 |
| GO:1901658 | 19 | Down | 5.32e-01 | 8.42e-01 |
| GO:0042454 | 19 | Down | 5.32e-01 | 8.42e-01 |
| GO:0006152 | 19 | Down | 5.32e-01 | 8.42e-01 |
| GO:0046130 | 19 | Down | 5.32e-01 | 8.42e-01 |
| GO:0055076 | 3 | Up | 5.32e-01 | 8.42e-01 |
| GO:0046916 | 3 | Up | 5.32e-01 | 8.42e-01 |
| GO:0044087 | 5 | Down | 5.33e-01 | 8.42e-01 |
| GO:0030833 | 5 | Down | 5.33e-01 | 8.42e-01 |
| GO:0032535 | 5 | Down | 5.33e-01 | 8.42e-01 |
| GO:0043254 | 5 | Down | 5.33e-01 | 8.42e-01 |
| GO:0090066 | 5 | Down | 5.33e-01 | 8.42e-01 |
| GO:0032271 | 5 | Down | 5.33e-01 | 8.42e-01 |
| GO:0032970 | 5 | Down | 5.33e-01 | 8.42e-01 |
| GO:0008064 | 5 | Down | 5.33e-01 | 8.42e-01 |
| GO:0032956 | 5 | Down | 5.33e-01 | 8.42e-01 |
| GO:0051493 | 5 | Down | 5.33e-01 | 8.42e-01 |
| GO:0030832 | 5 | Down | 5.33e-01 | 8.42e-01 |
| GO:0090305 | 10 | Up | 5.33e-01 | 8.42e-01 |
| GO:0051028 | 4 | Down | 5.33e-01 | 8.42e-01 |
| GO:0006886 | 102 | Down | 5.35e-01 | 8.42e-01 |
| GO:0031667 | 4 | Down | 5.35e-01 | 8.42e-01 |
| GO:0016567 | 11 | Down | 5.36e-01 | 8.42e-01 |
| GO:0070925 | 15 | Down | 5.36e-01 | 8.42e-01 |
| GO:0042775 | 2 | Up | 5.36e-01 | 8.42e-01 |
| GO:0006122 | 2 | Up | 5.36e-01 | 8.42e-01 |
| GO:0006323 | 10 | Down | 5.37e-01 | 8.42e-01 |
| GO:0034641 | 602 | Down | 5.38e-01 | 8.42e-01 |
| GO:0006259 | 120 | Up | 5.38e-01 | 8.42e-01 |
| GO:0033554 | 55 | Up | 5.40e-01 | 8.42e-01 |
| GO:0043161 | 21 | Up | 5.40e-01 | 8.42e-01 |
| GO:0010498 | 21 | Up | 5.40e-01 | 8.42e-01 |
| GO:0008152 | 1383 | Down | 5.41e-01 | 8.42e-01 |
| GO:0050801 | 12 | Up | 5.46e-01 | 8.42e-01 |
| GO:0055080 | 12 | Up | 5.46e-01 | 8.42e-01 |
| GO:0006370 | 3 | Down | 5.49e-01 | 8.42e-01 |
| GO:0018205 | 6 | Up | 5.51e-01 | 8.42e-01 |
| GO:0009219 | 2 | Up | 5.51e-01 | 8.42e-01 |
| GO:0006139 | 560 | Down | 5.56e-01 | 8.42e-01 |
| GO:0009069 | 7 | Up | 5.58e-01 | 8.42e-01 |
| GO:0051828 | 46 | Up | 5.60e-01 | 8.42e-01 |
| GO:0044409 | 46 | Up | 5.60e-01 | 8.42e-01 |
| GO:0042723 | 4 | Up | 5.61e-01 | 8.42e-01 |
| GO:0006772 | 4 | Up | 5.61e-01 | 8.42e-01 |
| GO:0042724 | 4 | Up | 5.61e-01 | 8.42e-01 |
| GO:0009228 | 4 | Up | 5.61e-01 | 8.42e-01 |
| GO:0000387 | 4 | Down | 5.62e-01 | 8.42e-01 |
| GO:0006376 | 3 | Down | 5.62e-01 | 8.42e-01 |
| GO:0006541 | 2 | Down | 5.63e-01 | 8.42e-01 |
| GO:0015748 | 6 | Down | 5.64e-01 | 8.42e-01 |
| GO:0006429 | 2 | Down | 5.64e-01 | 8.42e-01 |
| GO:0044802 | 14 | Down | 5.64e-01 | 8.42e-01 |
| GO:0033121 | 19 | Up | 5.65e-01 | 8.42e-01 |
| GO:0030811 | 19 | Up | 5.65e-01 | 8.42e-01 |
| GO:1900542 | 19 | Up | 5.65e-01 | 8.42e-01 |
| GO:0009118 | 19 | Up | 5.65e-01 | 8.42e-01 |
| GO:0006140 | 19 | Up | 5.65e-01 | 8.42e-01 |
| GO:0031329 | 19 | Up | 5.65e-01 | 8.42e-01 |
| GO:0045184 | 143 | Down | 5.65e-01 | 8.42e-01 |
| GO:0016192 | 83 | Up | 5.67e-01 | 8.42e-01 |
| GO:0031325 | 4 | Down | 5.68e-01 | 8.42e-01 |
| GO:0009893 | 4 | Down | 5.68e-01 | 8.42e-01 |
| GO:0010604 | 4 | Down | 5.68e-01 | 8.42e-01 |
| GO:0009259 | 41 | Up | 5.68e-01 | 8.42e-01 |
| GO:0051649 | 138 | Down | 5.68e-01 | 8.42e-01 |
| GO:0006914 | 6 | Down | 5.68e-01 | 8.42e-01 |
| GO:0019693 | 42 | Up | 5.69e-01 | 8.42e-01 |
| GO:0006512 | 5 | Down | 5.69e-01 | 8.42e-01 |
| GO:0006807 | 627 | Down | 5.70e-01 | 8.42e-01 |
| GO:0006812 | 42 | Up | 5.76e-01 | 8.46e-01 |
| GO:0016042 | 5 | Up | 5.76e-01 | 8.46e-01 |
| GO:0017183 | 5 | Up | 5.77e-01 | 8.46e-01 |
| GO:0017182 | 5 | Up | 5.77e-01 | 8.46e-01 |
| GO:0006787 | 2 | Down | 5.78e-01 | 8.46e-01 |
| GO:0033015 | 2 | Down | 5.78e-01 | 8.46e-01 |
| GO:0051052 | 4 | Up | 5.82e-01 | 8.48e-01 |
| GO:0040029 | 3 | Down | 5.82e-01 | 8.48e-01 |
| GO:0015031 | 142 | Down | 5.82e-01 | 8.48e-01 |
| GO:0032268 | 27 | Down | 5.85e-01 | 8.51e-01 |
| GO:0032446 | 18 | Down | 5.86e-01 | 8.51e-01 |
| GO:0000290 | 3 | Down | 5.90e-01 | 8.52e-01 |
| GO:0000288 | 3 | Down | 5.90e-01 | 8.52e-01 |
| GO:0015893 | 3 | Up | 5.91e-01 | 8.52e-01 |
| GO:0006855 | 3 | Up | 5.91e-01 | 8.52e-01 |
| GO:0090304 | 471 | Down | 5.93e-01 | 8.52e-01 |
| GO:0055085 | 69 | Up | 5.93e-01 | 8.52e-01 |
| GO:1902578 | 203 | Up | 5.94e-01 | 8.52e-01 |
| GO:1902600 | 16 | Up | 5.95e-01 | 8.52e-01 |
| GO:0009205 | 30 | Up | 5.96e-01 | 8.52e-01 |
| GO:0009199 | 30 | Up | 5.96e-01 | 8.52e-01 |
| GO:0008104 | 148 | Down | 5.96e-01 | 8.52e-01 |
| GO:0006289 | 11 | Up | 6.00e-01 | 8.53e-01 |
| GO:0009154 | 18 | Down | 6.04e-01 | 8.53e-01 |
| GO:0006195 | 18 | Down | 6.04e-01 | 8.53e-01 |
| GO:0009261 | 18 | Down | 6.04e-01 | 8.53e-01 |
| GO:1901659 | 23 | Up | 6.06e-01 | 8.53e-01 |
| GO:0015711 | 18 | Down | 6.07e-01 | 8.53e-01 |
| GO:0009123 | 18 | Up | 6.08e-01 | 8.53e-01 |
| GO:0009161 | 18 | Up | 6.08e-01 | 8.53e-01 |
| GO:0016311 | 15 | Down | 6.10e-01 | 8.53e-01 |
| GO:0043604 | 5 | Up | 6.11e-01 | 8.53e-01 |
| GO:0008295 | 3 | Up | 6.11e-01 | 8.53e-01 |
| GO:0042401 | 3 | Up | 6.11e-01 | 8.53e-01 |
| GO:0009309 | 3 | Up | 6.11e-01 | 8.53e-01 |
| GO:0006596 | 3 | Up | 6.11e-01 | 8.53e-01 |
| GO:0006950 | 91 | Down | 6.11e-01 | 8.53e-01 |
| GO:0007010 | 21 | Up | 6.12e-01 | 8.53e-01 |
| GO:0042558 | 7 | Down | 6.17e-01 | 8.57e-01 |
| GO:0070727 | 106 | Down | 6.18e-01 | 8.57e-01 |
| GO:0034613 | 106 | Down | 6.18e-01 | 8.57e-01 |
| GO:0034728 | 6 | Down | 6.19e-01 | 8.57e-01 |
| GO:0006334 | 6 | Down | 6.19e-01 | 8.57e-01 |
| GO:0051252 | 87 | Down | 6.24e-01 | 8.62e-01 |
| GO:0006418 | 38 | Down | 6.24e-01 | 8.62e-01 |
| GO:0009262 | 7 | Up | 6.27e-01 | 8.63e-01 |
| GO:0046777 | 1 | Up | 6.28e-01 | 8.63e-01 |
| GO:0009071 | 3 | Up | 6.31e-01 | 8.63e-01 |
| GO:0006546 | 3 | Up | 6.31e-01 | 8.63e-01 |
| GO:0046483 | 584 | Down | 6.32e-01 | 8.63e-01 |
| GO:0030522 | 2 | Down | 6.34e-01 | 8.63e-01 |
| GO:0046907 | 134 | Down | 6.34e-01 | 8.63e-01 |
| GO:0006725 | 583 | Down | 6.34e-01 | 8.63e-01 |
| GO:0051641 | 142 | Down | 6.35e-01 | 8.63e-01 |
| GO:0032259 | 26 | Down | 6.36e-01 | 8.63e-01 |
| GO:0000819 | 2 | Down | 6.39e-01 | 8.63e-01 |
| GO:0000070 | 2 | Down | 6.39e-01 | 8.63e-01 |
| GO:0051716 | 109 | Up | 6.40e-01 | 8.63e-01 |
| GO:0044765 | 199 | Up | 6.40e-01 | 8.63e-01 |
| GO:1901360 | 587 | Down | 6.42e-01 | 8.63e-01 |
| GO:0034660 | 124 | Down | 6.42e-01 | 8.63e-01 |
| GO:0009117 | 71 | Down | 6.42e-01 | 8.63e-01 |
| GO:0009187 | 4 | Down | 6.43e-01 | 8.63e-01 |
| GO:0009141 | 34 | Up | 6.44e-01 | 8.63e-01 |
| GO:0015718 | 7 | Down | 6.44e-01 | 8.63e-01 |
| GO:1901606 | 6 | Up | 6.45e-01 | 8.63e-01 |
| GO:0009063 | 6 | Up | 6.45e-01 | 8.63e-01 |
| GO:0015988 | 14 | Up | 6.46e-01 | 8.63e-01 |
| GO:0015991 | 14 | Up | 6.46e-01 | 8.63e-01 |
| GO:0009186 | 4 | Up | 6.48e-01 | 8.64e-01 |
| GO:0007166 | 8 | Up | 6.49e-01 | 8.64e-01 |
| GO:0006333 | 12 | Down | 6.50e-01 | 8.64e-01 |
| GO:0051336 | 21 | Up | 6.52e-01 | 8.64e-01 |
| GO:0009233 | 2 | Up | 6.52e-01 | 8.64e-01 |
| GO:0009234 | 2 | Up | 6.52e-01 | 8.64e-01 |
| GO:0009064 | 9 | Down | 6.55e-01 | 8.65e-01 |
| GO:0006270 | 11 | Up | 6.55e-01 | 8.65e-01 |
| GO:0006302 | 5 | Up | 6.59e-01 | 8.67e-01 |
| GO:1901069 | 17 | Down | 6.62e-01 | 8.67e-01 |
| GO:0006184 | 17 | Down | 6.62e-01 | 8.67e-01 |
| GO:0009146 | 17 | Down | 6.62e-01 | 8.67e-01 |
| GO:0009207 | 17 | Down | 6.62e-01 | 8.67e-01 |
| GO:0009203 | 17 | Down | 6.62e-01 | 8.67e-01 |
| GO:0071702 | 174 | Down | 6.64e-01 | 8.69e-01 |
| GO:0018202 | 6 | Up | 6.66e-01 | 8.69e-01 |
| GO:0048583 | 27 | Down | 6.67e-01 | 8.69e-01 |
| GO:0031323 | 139 | Down | 6.67e-01 | 8.69e-01 |
| GO:0010876 | 9 | Down | 6.71e-01 | 8.70e-01 |
| GO:0006869 | 9 | Down | 6.71e-01 | 8.70e-01 |
| GO:0043244 | 3 | Down | 6.71e-01 | 8.70e-01 |
| GO:0097428 | 1 | Down | 6.71e-01 | 8.70e-01 |
| GO:0006793 | 226 | Up | 6.73e-01 | 8.71e-01 |
| GO:0071705 | 16 | Down | 6.75e-01 | 8.72e-01 |
| GO:0048856 | 4 | Up | 6.76e-01 | 8.72e-01 |
| GO:0000041 | 7 | Up | 6.83e-01 | 8.78e-01 |
| GO:0002377 | 3 | Up | 6.84e-01 | 8.78e-01 |
| GO:0002440 | 3 | Up | 6.84e-01 | 8.78e-01 |
| GO:0009166 | 19 | Down | 6.85e-01 | 8.78e-01 |
| GO:0006753 | 73 | Down | 6.85e-01 | 8.78e-01 |
| GO:0030258 | 4 | Down | 6.89e-01 | 8.83e-01 |
| GO:0000304 | 2 | Up | 6.93e-01 | 8.85e-01 |
| GO:0022406 | 4 | Down | 6.95e-01 | 8.85e-01 |
| GO:0048278 | 4 | Down | 6.95e-01 | 8.85e-01 |
| GO:0006904 | 4 | Down | 6.95e-01 | 8.85e-01 |
| GO:0046434 | 22 | Down | 6.99e-01 | 8.88e-01 |
| GO:0016570 | 11 | Down | 7.09e-01 | 8.95e-01 |
| GO:0016569 | 11 | Down | 7.09e-01 | 8.95e-01 |
| GO:0006399 | 78 | Up | 7.10e-01 | 8.95e-01 |
| GO:0009070 | 2 | Up | 7.10e-01 | 8.95e-01 |
| GO:0051168 | 8 | Down | 7.11e-01 | 8.95e-01 |
| GO:0051259 | 6 | Up | 7.12e-01 | 8.95e-01 |
| GO:0019637 | 115 | Down | 7.13e-01 | 8.95e-01 |
| GO:0044283 | 59 | Up | 7.14e-01 | 8.95e-01 |
| GO:0009072 | 3 | Up | 7.14e-01 | 8.95e-01 |
| GO:0009073 | 3 | Up | 7.14e-01 | 8.95e-01 |
| GO:0048285 | 14 | Up | 7.15e-01 | 8.95e-01 |
| GO:0000280 | 14 | Up | 7.15e-01 | 8.95e-01 |
| GO:0009190 | 3 | Down | 7.25e-01 | 9.03e-01 |
| GO:0006470 | 11 | Up | 7.25e-01 | 9.03e-01 |
| GO:0044711 | 147 | Up | 7.25e-01 | 9.03e-01 |
| GO:2001141 | 85 | Down | 7.26e-01 | 9.03e-01 |
| GO:0006355 | 85 | Down | 7.26e-01 | 9.03e-01 |
| GO:0009143 | 18 | Down | 7.29e-01 | 9.06e-01 |
| GO:1901566 | 80 | Up | 7.33e-01 | 9.09e-01 |
| GO:0006383 | 7 | Down | 7.36e-01 | 9.11e-01 |
| GO:0050793 | 4 | Up | 7.37e-01 | 9.11e-01 |
| GO:0043414 | 18 | Down | 7.38e-01 | 9.11e-01 |
| GO:0045454 | 29 | Down | 7.38e-01 | 9.11e-01 |
| GO:0009067 | 3 | Down | 7.44e-01 | 9.14e-01 |
| GO:0008283 | 3 | Up | 7.45e-01 | 9.14e-01 |
| GO:0006865 | 4 | Up | 7.45e-01 | 9.14e-01 |
| GO:0006072 | 5 | Down | 7.47e-01 | 9.14e-01 |
| GO:1901292 | 20 | Down | 7.48e-01 | 9.14e-01 |
| GO:1902589 | 44 | Down | 7.50e-01 | 9.14e-01 |
| GO:0046128 | 41 | Up | 7.51e-01 | 9.14e-01 |
| GO:0042278 | 41 | Up | 7.51e-01 | 9.14e-01 |
| GO:0000724 | 2 | Down | 7.52e-01 | 9.14e-01 |
| GO:0000725 | 2 | Down | 7.52e-01 | 9.14e-01 |
| GO:0006163 | 43 | Up | 7.53e-01 | 9.14e-01 |
| GO:0009394 | 3 | Down | 7.55e-01 | 9.14e-01 |
| GO:0019692 | 3 | Down | 7.55e-01 | 9.14e-01 |
| GO:0009200 | 3 | Down | 7.55e-01 | 9.14e-01 |
| GO:0015992 | 19 | Up | 7.55e-01 | 9.14e-01 |
| GO:0006818 | 19 | Up | 7.55e-01 | 9.14e-01 |
| GO:0055114 | 95 | Up | 7.59e-01 | 9.17e-01 |
| GO:0006351 | 81 | Down | 7.62e-01 | 9.19e-01 |
| GO:0042274 | 9 | Down | 7.62e-01 | 9.19e-01 |
| GO:0009144 | 31 | Up | 7.65e-01 | 9.19e-01 |
| GO:0060249 | 3 | Down | 7.66e-01 | 9.19e-01 |
| GO:0000723 | 3 | Down | 7.66e-01 | 9.19e-01 |
| GO:0032200 | 3 | Down | 7.66e-01 | 9.19e-01 |
| GO:0044249 | 516 | Up | 7.73e-01 | 9.21e-01 |
| GO:0006432 | 3 | Up | 7.75e-01 | 9.21e-01 |
| GO:0009894 | 22 | Down | 7.75e-01 | 9.21e-01 |
| GO:0046486 | 25 | Up | 7.75e-01 | 9.21e-01 |
| GO:0048519 | 16 | Down | 7.76e-01 | 9.21e-01 |
| GO:0006644 | 35 | Up | 7.76e-01 | 9.21e-01 |
| GO:0006220 | 8 | Up | 7.77e-01 | 9.21e-01 |
| GO:0017004 | 2 | Up | 7.79e-01 | 9.21e-01 |
| GO:0042147 | 3 | Down | 7.80e-01 | 9.21e-01 |
| GO:0016197 | 3 | Down | 7.80e-01 | 9.21e-01 |
| GO:0006165 | 2 | Up | 7.81e-01 | 9.21e-01 |
| GO:0046939 | 2 | Up | 7.81e-01 | 9.21e-01 |
| GO:0032774 | 84 | Down | 7.82e-01 | 9.21e-01 |
| GO:0031497 | 7 | Down | 7.84e-01 | 9.21e-01 |
| GO:0006611 | 3 | Up | 7.86e-01 | 9.21e-01 |
| GO:0044763 | 585 | Up | 7.86e-01 | 9.21e-01 |
| GO:0046785 | 3 | Up | 7.86e-01 | 9.21e-01 |
| GO:0031109 | 3 | Up | 7.86e-01 | 9.21e-01 |
| GO:0007020 | 3 | Up | 7.86e-01 | 9.21e-01 |
| GO:0006446 | 9 | Up | 7.87e-01 | 9.21e-01 |
| GO:1901657 | 48 | Down | 7.89e-01 | 9.22e-01 |
| GO:0019673 | 3 | Down | 7.95e-01 | 9.27e-01 |
| GO:0042255 | 11 | Down | 7.96e-01 | 9.27e-01 |
| GO:0090501 | 4 | Down | 8.01e-01 | 9.29e-01 |
| GO:0055067 | 8 | Down | 8.01e-01 | 9.29e-01 |
| GO:0006885 | 8 | Down | 8.01e-01 | 9.29e-01 |
| GO:0070271 | 42 | Down | 8.02e-01 | 9.29e-01 |
| GO:0006461 | 42 | Down | 8.02e-01 | 9.29e-01 |
| GO:0016114 | 2 | Down | 8.04e-01 | 9.29e-01 |
| GO:0006721 | 2 | Down | 8.04e-01 | 9.29e-01 |
| GO:0001510 | 9 | Up | 8.06e-01 | 9.29e-01 |
| GO:0052652 | 2 | Down | 8.06e-01 | 9.29e-01 |
| GO:0046068 | 2 | Down | 8.06e-01 | 9.29e-01 |
| GO:0006891 | 3 | Up | 8.14e-01 | 9.34e-01 |
| GO:0007264 | 24 | Down | 8.15e-01 | 9.34e-01 |
| GO:0006836 | 1 | Down | 8.17e-01 | 9.34e-01 |
| GO:0015849 | 13 | Down | 8.17e-01 | 9.34e-01 |
| GO:0046942 | 13 | Down | 8.17e-01 | 9.34e-01 |
| GO:0006424 | 3 | Up | 8.18e-01 | 9.34e-01 |
| GO:1901293 | 37 | Up | 8.19e-01 | 9.34e-01 |
| GO:1902582 | 80 | Down | 8.19e-01 | 9.34e-01 |
| GO:0006360 | 3 | Down | 8.21e-01 | 9.35e-01 |
| GO:0016925 | 4 | Down | 8.21e-01 | 9.35e-01 |
| GO:0071822 | 51 | Down | 8.22e-01 | 9.35e-01 |
| GO:0046488 | 18 | Up | 8.24e-01 | 9.35e-01 |
| GO:0034654 | 128 | Down | 8.25e-01 | 9.35e-01 |
| GO:0006040 | 4 | Up | 8.27e-01 | 9.35e-01 |
| GO:0009058 | 529 | Up | 8.27e-01 | 9.35e-01 |
| GO:0035556 | 36 | Down | 8.27e-01 | 9.35e-01 |
| GO:0018193 | 25 | Up | 8.30e-01 | 9.37e-01 |
| GO:0019725 | 42 | Up | 8.33e-01 | 9.37e-01 |
| GO:0009165 | 36 | Up | 8.37e-01 | 9.37e-01 |
| GO:0045851 | 7 | Up | 8.37e-01 | 9.37e-01 |
| GO:0030641 | 7 | Up | 8.37e-01 | 9.37e-01 |
| GO:0051452 | 7 | Up | 8.37e-01 | 9.37e-01 |
| GO:0007035 | 7 | Up | 8.37e-01 | 9.37e-01 |
| GO:0051453 | 7 | Up | 8.37e-01 | 9.37e-01 |
| GO:0030004 | 7 | Up | 8.37e-01 | 9.37e-01 |
| GO:0043623 | 26 | Down | 8.40e-01 | 9.38e-01 |
| GO:1901071 | 3 | Down | 8.41e-01 | 9.38e-01 |
| GO:0006796 | 219 | Up | 8.41e-01 | 9.38e-01 |
| GO:0007033 | 4 | Down | 8.43e-01 | 9.38e-01 |
| GO:0006471 | 3 | Up | 8.47e-01 | 9.42e-01 |
| GO:0006119 | 3 | Down | 8.52e-01 | 9.45e-01 |
| GO:0042773 | 3 | Down | 8.52e-01 | 9.45e-01 |
| GO:0051179 | 346 | Up | 8.53e-01 | 9.46e-01 |
| GO:0009116 | 47 | Down | 8.55e-01 | 9.46e-01 |
| GO:0072528 | 14 | Down | 8.60e-01 | 9.50e-01 |
| GO:0007154 | 59 | Down | 8.61e-01 | 9.50e-01 |
| GO:0009225 | 4 | Up | 8.66e-01 | 9.55e-01 |
| GO:0022900 | 7 | Up | 8.69e-01 | 9.57e-01 |
| GO:0006310 | 18 | Down | 8.70e-01 | 9.57e-01 |
| GO:1901068 | 19 | Down | 8.72e-01 | 9.57e-01 |
| GO:0052646 | 6 | Up | 8.75e-01 | 9.57e-01 |
| GO:1901576 | 518 | Up | 8.75e-01 | 9.57e-01 |
| GO:0008299 | 7 | Down | 8.76e-01 | 9.57e-01 |
| GO:0006720 | 7 | Down | 8.76e-01 | 9.57e-01 |
| GO:0051171 | 110 | Down | 8.77e-01 | 9.57e-01 |
| GO:0019219 | 110 | Down | 8.77e-01 | 9.57e-01 |
| GO:0006928 | 33 | Down | 8.79e-01 | 9.58e-01 |
| GO:0034637 | 3 | Down | 8.84e-01 | 9.61e-01 |
| GO:0023052 | 54 | Up | 8.85e-01 | 9.61e-01 |
| GO:0044700 | 54 | Up | 8.85e-01 | 9.61e-01 |
| GO:0007165 | 54 | Up | 8.85e-01 | 9.61e-01 |
| GO:0006650 | 24 | Up | 8.89e-01 | 9.62e-01 |
| GO:0022603 | 2 | Up | 8.89e-01 | 9.62e-01 |
| GO:0042592 | 47 | Up | 8.89e-01 | 9.62e-01 |
| GO:0034220 | 19 | Up | 8.93e-01 | 9.65e-01 |
| GO:0070972 | 8 | Down | 8.94e-01 | 9.65e-01 |
| GO:0043085 | 4 | Down | 8.97e-01 | 9.66e-01 |
| GO:0044093 | 4 | Down | 8.97e-01 | 9.66e-01 |
| GO:0006810 | 332 | Up | 8.99e-01 | 9.67e-01 |
| GO:0000393 | 5 | Down | 9.08e-01 | 9.69e-01 |
| GO:0008216 | 4 | Down | 9.08e-01 | 9.69e-01 |
| GO:0006595 | 4 | Down | 9.08e-01 | 9.69e-01 |
| GO:0051234 | 333 | Up | 9.11e-01 | 9.69e-01 |
| GO:0007017 | 31 | Up | 9.12e-01 | 9.69e-01 |
| GO:0010639 | 3 | Down | 9.14e-01 | 9.69e-01 |
| GO:0051129 | 3 | Down | 9.14e-01 | 9.69e-01 |
| GO:0030837 | 3 | Down | 9.14e-01 | 9.69e-01 |
| GO:0051494 | 3 | Down | 9.14e-01 | 9.69e-01 |
| GO:0032272 | 3 | Down | 9.14e-01 | 9.69e-01 |
| GO:0031333 | 3 | Down | 9.14e-01 | 9.69e-01 |
| GO:0044271 | 158 | Up | 9.15e-01 | 9.69e-01 |
| GO:0015908 | 3 | Up | 9.17e-01 | 9.69e-01 |
| GO:0046578 | 17 | Down | 9.17e-01 | 9.69e-01 |
| GO:0051056 | 17 | Down | 9.17e-01 | 9.69e-01 |
| GO:1902531 | 17 | Down | 9.17e-01 | 9.69e-01 |
| GO:0046394 | 39 | Up | 9.28e-01 | 9.76e-01 |
| GO:0016053 | 39 | Up | 9.28e-01 | 9.76e-01 |
| GO:0051187 | 3 | Down | 9.32e-01 | 9.76e-01 |
| GO:0006405 | 4 | Down | 9.32e-01 | 9.76e-01 |
| GO:0006613 | 5 | Down | 9.34e-01 | 9.76e-01 |
| GO:0006614 | 5 | Down | 9.34e-01 | 9.76e-01 |
| GO:0006606 | 10 | Down | 9.34e-01 | 9.76e-01 |
| GO:0051170 | 10 | Down | 9.34e-01 | 9.76e-01 |
| GO:0034504 | 10 | Down | 9.34e-01 | 9.76e-01 |
| GO:1902593 | 10 | Down | 9.34e-01 | 9.76e-01 |
| GO:0044744 | 10 | Down | 9.34e-01 | 9.76e-01 |
| GO:0006811 | 79 | Down | 9.40e-01 | 9.80e-01 |
| GO:0042819 | 3 | Up | 9.42e-01 | 9.80e-01 |
| GO:0042816 | 3 | Up | 9.42e-01 | 9.80e-01 |
| GO:0008614 | 3 | Up | 9.42e-01 | 9.80e-01 |
| GO:0072521 | 48 | Up | 9.44e-01 | 9.80e-01 |
| GO:0044710 | 420 | Down | 9.46e-01 | 9.80e-01 |
| GO:0072525 | 4 | Down | 9.48e-01 | 9.80e-01 |
| GO:0032313 | 13 | Down | 9.49e-01 | 9.80e-01 |
| GO:0032483 | 13 | Down | 9.49e-01 | 9.80e-01 |
| GO:0034470 | 83 | Down | 9.49e-01 | 9.80e-01 |
| GO:0006749 | 4 | Up | 9.56e-01 | 9.84e-01 |
| GO:0022904 | 6 | Up | 9.58e-01 | 9.84e-01 |
| GO:0032270 | 3 | Up | 9.58e-01 | 9.84e-01 |
| GO:0051247 | 3 | Up | 9.58e-01 | 9.84e-01 |
| GO:0009059 | 385 | Up | 9.59e-01 | 9.84e-01 |
| GO:0019438 | 148 | Up | 9.59e-01 | 9.84e-01 |
| GO:0015931 | 11 | Down | 9.60e-01 | 9.84e-01 |
| GO:0009119 | 46 | Down | 9.61e-01 | 9.85e-01 |
| GO:0034645 | 383 | Up | 9.62e-01 | 9.85e-01 |
| GO:0010646 | 21 | Up | 9.66e-01 | 9.85e-01 |
| GO:0023051 | 21 | Up | 9.66e-01 | 9.85e-01 |
| GO:0009966 | 21 | Up | 9.66e-01 | 9.85e-01 |
| GO:0016458 | 3 | Down | 9.69e-01 | 9.85e-01 |
| GO:0072511 | 6 | Down | 9.70e-01 | 9.85e-01 |
| GO:0070838 | 6 | Down | 9.70e-01 | 9.85e-01 |
| GO:0030048 | 4 | Up | 9.70e-01 | 9.85e-01 |
| GO:0046039 | 18 | Down | 9.74e-01 | 9.88e-01 |
| GO:0018130 | 152 | Down | 9.75e-01 | 9.88e-01 |
| GO:0006308 | 4 | Up | 9.75e-01 | 9.88e-01 |
| GO:0072527 | 15 | Up | 9.78e-01 | 9.89e-01 |
| GO:0006888 | 20 | Up | 9.91e-01 | 9.99e-01 |
| GO:0006607 | 3 | Down | 9.92e-01 | 9.99e-01 |
| GO:0046903 | 5 | Up | 9.93e-01 | 9.99e-01 |
| GO:0006887 | 5 | Up | 9.93e-01 | 9.99e-01 |
| GO:0032940 | 5 | Up | 9.93e-01 | 9.99e-01 |
| GO:0007034 | 5 | Down | 9.93e-01 | 9.99e-01 |
| GO:0043952 | 5 | Down | 9.94e-01 | 9.99e-01 |
| GO:0006221 | 7 | Up | 9.96e-01 | 9.99e-01 |
| GO:0009432 | 2 | Down | 9.98e-01 | 9.99e-01 |
| GO:0000096 | 3 | Up | 9.98e-01 | 9.99e-01 |
| GO:1901362 | 155 | Up | 9.99e-01 | 9.99e-01 |
Now KEGG pathway enrichment again making use of mroast and camera.
indices <- ids2indices(kegg.gene.sets, rownames(v2))
keg_mr <- mroast(v2, index = indices, design = modRUV, contrast = 2, nrot = 10000, set.statistic = "floormean")
keg_cam <- camera(v2, index = indices, design = modRUV, contrast = 2)
keg_mr$PValue <- format(keg_mr$PValue, scientific = TRUE, digits = 3)
keg_mr$FDR <- format(keg_mr$FDR, scientific = TRUE, digits = 3)
keg_mr$PValue.Mixed <- format(keg_mr$PValue.Mixed, scientific = TRUE, digits = 3)
keg_mr$FDR.Mixed <- format(keg_mr$FDR.Mixed, scientific = TRUE, digits = 3)
kable(keg_mr, digits = 3)
| NGenes | PropDown | PropUp | Direction | PValue | FDR | PValue.Mixed | FDR.Mixed | |
|---|---|---|---|---|---|---|---|---|
| ec00250__PK__KEGG | 12 | 0.250 | 0.000 | Down | 3.30e-03 | 9.75e-02 | 1.30e-02 | 2.82e-02 |
| ec00740__PK__KEGG | 8 | 0.375 | 0.500 | Up | 3.60e-03 | 9.75e-02 | 4.00e-04 | 1.53e-02 |
| ec00710__PK__KEGG | 10 | 0.600 | 0.000 | Down | 4.00e-03 | 9.75e-02 | 6.10e-03 | 2.04e-02 |
| ec00280__PK__KEGG | 8 | 0.125 | 0.500 | Up | 4.50e-03 | 9.75e-02 | 4.80e-03 | 1.85e-02 |
| ec00600__PK__KEGG | 11 | 0.091 | 0.545 | Up | 5.30e-03 | 9.75e-02 | 4.00e-03 | 1.72e-02 |
| ec00650__PK__KEGG | 18 | 0.056 | 0.444 | Up | 5.60e-03 | 9.75e-02 | 9.40e-03 | 2.37e-02 |
| ec00010__PK__KEGG | 25 | 0.440 | 0.080 | Down | 7.00e-03 | 9.75e-02 | 4.20e-03 | 1.74e-02 |
| ec00562__PK__KEGG | 18 | 0.278 | 0.111 | Down | 8.70e-03 | 9.75e-02 | 6.40e-03 | 2.04e-02 |
| ec00020__PK__KEGG | 18 | 0.111 | 0.389 | Up | 8.90e-03 | 9.75e-02 | 2.10e-03 | 1.53e-02 |
| ec00380__PK__KEGG | 61 | 0.180 | 0.246 | Up | 9.00e-03 | 9.75e-02 | 2.30e-03 | 1.53e-02 |
| ec00565__PK__KEGG | 24 | 0.208 | 0.292 | Up | 1.22e-02 | 9.96e-02 | 8.00e-04 | 1.53e-02 |
| ec00561__PK__KEGG | 15 | 0.133 | 0.200 | Up | 1.32e-02 | 9.96e-02 | 3.80e-03 | 1.72e-02 |
| ec00591__PK__KEGG | 7 | 0.286 | 0.143 | Down | 1.39e-02 | 9.96e-02 | 3.10e-03 | 1.72e-02 |
| ec00230__PK__KEGG | 78 | 0.244 | 0.128 | Down | 1.39e-02 | 9.96e-02 | 9.00e-04 | 1.53e-02 |
| ec00720__PK__KEGG | 17 | 0.118 | 0.412 | Up | 1.79e-02 | 9.96e-02 | 8.70e-03 | 2.35e-02 |
| ec00900__PK__KEGG | 26 | 0.077 | 0.269 | Up | 1.87e-02 | 9.96e-02 | 7.00e-03 | 2.16e-02 |
| ec00030__PK__KEGG | 14 | 0.429 | 0.000 | Down | 1.95e-02 | 9.96e-02 | 2.60e-02 | 4.32e-02 |
| ec00983__PK__KEGG | 15 | 0.400 | 0.067 | Down | 2.00e-02 | 9.96e-02 | 1.24e-02 | 2.75e-02 |
| ec00590__PK__KEGG | 7 | 0.286 | 0.000 | Down | 2.06e-02 | 9.96e-02 | 1.15e-02 | 2.65e-02 |
| ec00361__PK__KEGG | 6 | 0.167 | 0.500 | Up | 2.25e-02 | 9.96e-02 | 1.08e-02 | 2.57e-02 |
| ec00362__PK__KEGG | 19 | 0.158 | 0.368 | Up | 2.44e-02 | 9.96e-02 | 1.58e-02 | 3.09e-02 |
| ec00440__PK__KEGG | 4 | 0.500 | 0.000 | Down | 2.64e-02 | 9.96e-02 | 2.62e-02 | 4.32e-02 |
| ec00624__PK__KEGG | 36 | 0.222 | 0.222 | Up | 2.76e-02 | 9.96e-02 | 1.40e-03 | 1.53e-02 |
| ec00240__PK__KEGG | 72 | 0.194 | 0.167 | Up | 2.90e-02 | 9.96e-02 | 6.00e-04 | 1.53e-02 |
| ec00627__PK__KEGG | 61 | 0.213 | 0.246 | Up | 2.94e-02 | 9.96e-02 | 1.70e-03 | 1.53e-02 |
| ec00351__PK__KEGG | 1 | 0.000 | 1.000 | Up | 2.97e-02 | 9.96e-02 | 2.97e-02 | 4.71e-02 |
| ec00730__PK__KEGG | 14 | 0.071 | 0.214 | Up | 3.03e-02 | 9.96e-02 | 4.21e-02 | 6.28e-02 |
| ec00660__PK__KEGG | 3 | 0.000 | 0.667 | Up | 3.14e-02 | 9.96e-02 | 3.29e-02 | 5.11e-02 |
| ec00625__PK__KEGG | 4 | 0.250 | 0.250 | Down | 3.25e-02 | 9.96e-02 | 2.35e-02 | 4.12e-02 |
| ec00623__PK__KEGG | 17 | 0.118 | 0.353 | Up | 3.36e-02 | 9.96e-02 | 1.17e-02 | 2.65e-02 |
| ec00062__PK__KEGG | 6 | 0.167 | 0.667 | Up | 3.40e-02 | 9.96e-02 | 1.60e-02 | 3.09e-02 |
| ec00860__PK__KEGG | 50 | 0.160 | 0.200 | Up | 3.40e-02 | 9.96e-02 | 1.09e-02 | 2.57e-02 |
| ec00970__PK__KEGG | 41 | 0.341 | 0.171 | Down | 3.52e-02 | 9.96e-02 | 7.50e-03 | 2.19e-02 |
| ec00360__PK__KEGG | 49 | 0.204 | 0.245 | Up | 3.61e-02 | 9.96e-02 | 1.20e-03 | 1.53e-02 |
| ec00942__PK__KEGG | 46 | 0.174 | 0.261 | Up | 3.76e-02 | 9.96e-02 | 4.40e-03 | 1.76e-02 |
| ec00941__PK__KEGG | 36 | 0.222 | 0.222 | Up | 3.79e-02 | 9.96e-02 | 1.30e-03 | 1.53e-02 |
| ec00945__PK__KEGG | 36 | 0.222 | 0.222 | Up | 3.84e-02 | 9.96e-02 | 1.60e-03 | 1.53e-02 |
| ec00270__PK__KEGG | 49 | 0.224 | 0.204 | Up | 3.86e-02 | 9.96e-02 | 1.90e-03 | 1.53e-02 |
| ec01057__PK__KEGG | 42 | 0.190 | 0.238 | Up | 3.93e-02 | 9.96e-02 | 3.80e-03 | 1.72e-02 |
| ec00053__PK__KEGG | 7 | 0.143 | 0.286 | Up | 3.95e-02 | 9.96e-02 | 5.30e-03 | 1.85e-02 |
| ec01051__PK__KEGG | 36 | 0.222 | 0.222 | Up | 3.99e-02 | 9.96e-02 | 2.20e-03 | 1.53e-02 |
| ec00260__PK__KEGG | 16 | 0.062 | 0.438 | Up | 4.05e-02 | 9.96e-02 | 2.10e-02 | 3.94e-02 |
| ec00253__PK__KEGG | 51 | 0.176 | 0.235 | Up | 4.05e-02 | 9.96e-02 | 3.90e-03 | 1.72e-02 |
| ec00130__PK__KEGG | 40 | 0.225 | 0.200 | Up | 4.13e-02 | 9.96e-02 | 2.20e-03 | 1.53e-02 |
| ec00340__PK__KEGG | 46 | 0.196 | 0.239 | Up | 4.14e-02 | 9.96e-02 | 3.20e-03 | 1.72e-02 |
| ec00920__PK__KEGG | 4 | 0.000 | 0.500 | Up | 4.21e-02 | 9.96e-02 | 6.63e-02 | 8.69e-02 |
| ec00350__PK__KEGG | 50 | 0.200 | 0.220 | Up | 4.39e-02 | 1.01e-01 | 2.60e-03 | 1.54e-02 |
| ec00450__PK__KEGG | 41 | 0.195 | 0.220 | Up | 4.47e-02 | 1.01e-01 | 2.00e-03 | 1.53e-02 |
| ec00940__PK__KEGG | 48 | 0.188 | 0.229 | Up | 4.72e-02 | 1.03e-01 | 2.10e-03 | 1.53e-02 |
| ec00981__PK__KEGG | 38 | 0.184 | 0.237 | Up | 4.77e-02 | 1.03e-01 | 5.30e-03 | 1.85e-02 |
| ec00903__PK__KEGG | 16 | 0.188 | 0.312 | Up | 4.83e-02 | 1.03e-01 | 1.62e-02 | 3.09e-02 |
| ec00965__PK__KEGG | 12 | 0.083 | 0.417 | Up | 5.48e-02 | 1.14e-01 | 4.89e-02 | 7.19e-02 |
| ec00480__PK__KEGG | 25 | 0.200 | 0.280 | Up | 5.59e-02 | 1.14e-01 | 2.50e-03 | 1.54e-02 |
| ec00910__PK__KEGG | 6 | 0.167 | 0.000 | Down | 5.74e-02 | 1.14e-01 | 7.78e-02 | 9.41e-02 |
| ec00564__PK__KEGG | 53 | 0.151 | 0.264 | Up | 5.82e-02 | 1.14e-01 | 7.70e-03 | 2.19e-02 |
| ec00310__PK__KEGG | 40 | 0.225 | 0.275 | Up | 6.08e-02 | 1.14e-01 | 5.30e-03 | 1.85e-02 |
| ec00603__PK__KEGG | 1 | 0.000 | 1.000 | Up | 6.13e-02 | 1.14e-01 | 6.13e-02 | 8.69e-02 |
| ec00592__PK__KEGG | 9 | 0.222 | 0.222 | Down | 6.29e-02 | 1.14e-01 | 6.40e-03 | 2.04e-02 |
| ec00522__PK__KEGG | 1 | 0.000 | 1.000 | Up | 6.37e-02 | 1.14e-01 | 6.37e-02 | 8.69e-02 |
| ec00513__PK__KEGG | 1 | 0.000 | 1.000 | Up | 6.40e-02 | 1.14e-01 | 6.40e-02 | 8.69e-02 |
| ec00944__PK__KEGG | 1 | 0.000 | 1.000 | Up | 6.43e-02 | 1.14e-01 | 6.43e-02 | 8.69e-02 |
| ec00604__PK__KEGG | 1 | 0.000 | 1.000 | Up | 6.50e-02 | 1.14e-01 | 6.50e-02 | 8.69e-02 |
| ec00512__PK__KEGG | 1 | 0.000 | 1.000 | Up | 6.78e-02 | 1.15e-01 | 6.78e-02 | 8.69e-02 |
| ec00906__PK__KEGG | 13 | 0.154 | 0.385 | Up | 6.78e-02 | 1.15e-01 | 1.62e-02 | 3.09e-02 |
| ec00601__PK__KEGG | 1 | 0.000 | 1.000 | Up | 6.88e-02 | 1.15e-01 | 6.88e-02 | 8.71e-02 |
| ec00626__PK__KEGG | 13 | 0.154 | 0.308 | Up | 7.59e-02 | 1.25e-01 | 2.99e-02 | 4.71e-02 |
| ec00982__PK__KEGG | 3 | 0.333 | 0.333 | Down | 7.68e-02 | 1.25e-01 | 3.92e-02 | 5.93e-02 |
| ec00630__PK__KEGG | 9 | 0.111 | 0.444 | Up | 7.96e-02 | 1.27e-01 | 1.35e-02 | 2.87e-02 |
| ec00680__PK__KEGG | 24 | 0.208 | 0.292 | Up | 8.24e-02 | 1.27e-01 | 9.70e-03 | 2.39e-02 |
| ec00950__PK__KEGG | 48 | 0.167 | 0.229 | Up | 8.29e-02 | 1.27e-01 | 8.90e-03 | 2.35e-02 |
| ec00330__PK__KEGG | 27 | 0.074 | 0.296 | Up | 8.44e-02 | 1.27e-01 | 1.40e-02 | 2.92e-02 |
| ec00966__PK__KEGG | 3 | 0.333 | 0.333 | Down | 8.49e-02 | 1.27e-01 | 2.68e-02 | 4.35e-02 |
| ec00140__PK__KEGG | 3 | 0.333 | 0.333 | Down | 8.60e-02 | 1.27e-01 | 2.47e-02 | 4.20e-02 |
| ec00540__PK__KEGG | 11 | 0.091 | 0.364 | Up | 8.63e-02 | 1.27e-01 | 7.69e-02 | 9.41e-02 |
| ec00300__PK__KEGG | 19 | 0.158 | 0.211 | Up | 8.81e-02 | 1.28e-01 | 2.14e-02 | 3.94e-02 |
| ec00622__PK__KEGG | 4 | 0.250 | 0.500 | Up | 9.24e-02 | 1.31e-01 | 9.10e-03 | 2.35e-02 |
| ec00231__PK__KEGG | 11 | 0.091 | 0.364 | Up | 9.29e-02 | 1.31e-01 | 5.69e-02 | 8.26e-02 |
| ec00930__PK__KEGG | 7 | 0.143 | 0.429 | Up | 9.76e-02 | 1.36e-01 | 1.05e-01 | 1.25e-01 |
| ec00790__PK__KEGG | 9 | 0.222 | 0.222 | Down | 1.00e-01 | 1.37e-01 | 4.00e-03 | 1.72e-02 |
| ec00770__PK__KEGG | 8 | 0.000 | 0.250 | Up | 1.02e-01 | 1.37e-01 | 1.24e-01 | 1.43e-01 |
| ec00904__PK__KEGG | 12 | 0.167 | 0.333 | Up | 1.04e-01 | 1.37e-01 | 2.44e-02 | 4.20e-02 |
| ec00071__PK__KEGG | 18 | 0.278 | 0.333 | Up | 1.05e-01 | 1.37e-01 | 2.22e-02 | 3.96e-02 |
| ec00281__PK__KEGG | 4 | 0.250 | 0.500 | Up | 1.05e-01 | 1.37e-01 | 6.70e-02 | 8.69e-02 |
| ec00670__PK__KEGG | 7 | 0.000 | 0.429 | Up | 1.05e-01 | 1.37e-01 | 1.38e-01 | 1.56e-01 |
| ec00642__PK__KEGG | 13 | 0.154 | 0.308 | Up | 1.07e-01 | 1.37e-01 | 6.74e-02 | 8.69e-02 |
| ec00785__PK__KEGG | 2 | 0.000 | 0.500 | Up | 1.10e-01 | 1.40e-01 | 1.66e-01 | 1.85e-01 |
| ec00640__PK__KEGG | 17 | 0.118 | 0.294 | Up | 1.45e-01 | 1.81e-01 | 7.60e-03 | 2.19e-02 |
| ec00364__PK__KEGG | 6 | 0.167 | 0.333 | Up | 1.46e-01 | 1.81e-01 | 1.11e-01 | 1.30e-01 |
| ec00830__PK__KEGG | 5 | 0.200 | 0.200 | Down | 1.49e-01 | 1.83e-01 | 2.18e-02 | 3.95e-02 |
| ec00510__PK__KEGG | 3 | 0.000 | 0.333 | Up | 1.56e-01 | 1.87e-01 | 2.28e-01 | 2.46e-01 |
| ec00620__PK__KEGG | 23 | 0.174 | 0.174 | Up | 1.58e-01 | 1.87e-01 | 8.90e-03 | 2.35e-02 |
| ec00563__PK__KEGG | 7 | 0.000 | 0.429 | Up | 1.58e-01 | 1.87e-01 | 1.87e-01 | 2.05e-01 |
| ec00051__PK__KEGG | 20 | 0.150 | 0.150 | Down | 1.71e-01 | 2.01e-01 | 1.61e-02 | 3.09e-02 |
| ec00040__PK__KEGG | 6 | 0.000 | 0.333 | Up | 1.87e-01 | 2.17e-01 | 3.29e-01 | 3.41e-01 |
| ec00960__PK__KEGG | 18 | 0.167 | 0.222 | Up | 2.29e-01 | 2.62e-01 | 6.31e-02 | 8.69e-02 |
| ec00908__PK__KEGG | 2 | 0.000 | 0.500 | Up | 2.33e-01 | 2.64e-01 | 7.42e-02 | 9.20e-02 |
| ec00363__PK__KEGG | 6 | 0.167 | 0.167 | Down | 2.37e-01 | 2.66e-01 | 3.40e-02 | 5.21e-02 |
| ec00061__PK__KEGG | 9 | 0.222 | 0.222 | Up | 2.62e-01 | 2.91e-01 | 7.86e-02 | 9.41e-02 |
| ec01056__PK__KEGG | 3 | 0.000 | 0.333 | Up | 2.84e-01 | 3.12e-01 | 4.18e-01 | 4.26e-01 |
| ec00500__PK__KEGG | 5 | 0.200 | 0.200 | Down | 2.97e-01 | 3.23e-01 | 1.27e-01 | 1.45e-01 |
| ec00760__PK__KEGG | 12 | 0.083 | 0.250 | Up | 3.00e-01 | 3.24e-01 | 1.53e-01 | 1.72e-01 |
| ec00633__PK__KEGG | 4 | 0.000 | 0.500 | Up | 3.08e-01 | 3.29e-01 | 2.83e-01 | 2.99e-01 |
| ec00400__PK__KEGG | 8 | 0.000 | 0.250 | Up | 3.15e-01 | 3.33e-01 | 4.61e-01 | 4.65e-01 |
| ec00410__PK__KEGG | 4 | 0.000 | 0.250 | Down | 3.50e-01 | 3.67e-01 | 7.43e-02 | 9.20e-02 |
| ec00750__PK__KEGG | 2 | 0.000 | 0.000 | Up | 4.55e-01 | 4.72e-01 | 4.06e-01 | 4.18e-01 |
| ec00780__PK__KEGG | 13 | 0.154 | 0.077 | Up | 5.11e-01 | 5.26e-01 | 1.94e-01 | 2.12e-01 |
| ec00052__PK__KEGG | 8 | 0.125 | 0.125 | Down | 5.80e-01 | 5.91e-01 | 2.81e-01 | 2.99e-01 |
| ec00520__PK__KEGG | 21 | 0.095 | 0.143 | Down | 5.86e-01 | 5.91e-01 | 3.03e-01 | 3.18e-01 |
| ec00521__PK__KEGG | 5 | 0.000 | 0.000 | Down | 6.06e-01 | 6.06e-01 | 8.40e-01 | 8.40e-01 |
Also test using limma’s camera
keg_cam$PValue <- format(keg_cam$PValue, scientific = TRUE, digits = 3)
keg_cam$FDR <- format(keg_cam$FDR, scientific = TRUE, digits = 3)
kable(keg_cam, digits = 3)
| NGenes | Direction | PValue | FDR | |
|---|---|---|---|---|
| ec00710__PK__KEGG | 10 | Down | 2.10e-03 | 2.29e-01 |
| ec00010__PK__KEGG | 25 | Down | 4.86e-03 | 2.65e-01 |
| ec00600__PK__KEGG | 11 | Up | 2.59e-02 | 6.94e-01 |
| ec00250__PK__KEGG | 12 | Down | 2.85e-02 | 6.94e-01 |
| ec00900__PK__KEGG | 26 | Up | 4.18e-02 | 6.94e-01 |
| ec00650__PK__KEGG | 18 | Up | 4.36e-02 | 6.94e-01 |
| ec00030__PK__KEGG | 14 | Down | 4.87e-02 | 6.94e-01 |
| ec00440__PK__KEGG | 4 | Down | 5.64e-02 | 6.94e-01 |
| ec00983__PK__KEGG | 15 | Down | 5.73e-02 | 6.94e-01 |
| ec00020__PK__KEGG | 18 | Up | 7.10e-02 | 7.25e-01 |
| ec00920__PK__KEGG | 4 | Up | 7.43e-02 | 7.25e-01 |
| ec00562__PK__KEGG | 18 | Down | 8.85e-02 | 7.25e-01 |
| ec00720__PK__KEGG | 17 | Up | 1.20e-01 | 7.25e-01 |
| ec00965__PK__KEGG | 12 | Up | 1.45e-01 | 7.25e-01 |
| ec00260__PK__KEGG | 16 | Up | 1.50e-01 | 7.25e-01 |
| ec00565__PK__KEGG | 24 | Up | 1.68e-01 | 7.25e-01 |
| ec00280__PK__KEGG | 8 | Up | 1.77e-01 | 7.25e-01 |
| ec00730__PK__KEGG | 14 | Up | 1.85e-01 | 7.25e-01 |
| ec00660__PK__KEGG | 3 | Up | 1.87e-01 | 7.25e-01 |
| ec00670__PK__KEGG | 7 | Up | 1.92e-01 | 7.25e-01 |
| ec00351__PK__KEGG | 1 | Up | 1.93e-01 | 7.25e-01 |
| ec00860__PK__KEGG | 50 | Up | 2.10e-01 | 7.25e-01 |
| ec00601__PK__KEGG | 1 | Up | 2.20e-01 | 7.25e-01 |
| ec00944__PK__KEGG | 1 | Up | 2.20e-01 | 7.25e-01 |
| ec00522__PK__KEGG | 1 | Up | 2.20e-01 | 7.25e-01 |
| ec00513__PK__KEGG | 1 | Up | 2.20e-01 | 7.25e-01 |
| ec00603__PK__KEGG | 1 | Up | 2.20e-01 | 7.25e-01 |
| ec00604__PK__KEGG | 1 | Up | 2.20e-01 | 7.25e-01 |
| ec00512__PK__KEGG | 1 | Up | 2.20e-01 | 7.25e-01 |
| ec00361__PK__KEGG | 6 | Up | 2.26e-01 | 7.25e-01 |
| ec00942__PK__KEGG | 46 | Up | 2.31e-01 | 7.25e-01 |
| ec00770__PK__KEGG | 8 | Up | 2.32e-01 | 7.25e-01 |
| ec00590__PK__KEGG | 7 | Down | 2.38e-01 | 7.25e-01 |
| ec00540__PK__KEGG | 11 | Up | 2.40e-01 | 7.25e-01 |
| ec00062__PK__KEGG | 6 | Up | 2.42e-01 | 7.25e-01 |
| ec00910__PK__KEGG | 6 | Down | 2.46e-01 | 7.25e-01 |
| ec00623__PK__KEGG | 17 | Up | 2.49e-01 | 7.25e-01 |
| ec00563__PK__KEGG | 7 | Up | 2.53e-01 | 7.25e-01 |
| ec00561__PK__KEGG | 15 | Up | 2.69e-01 | 7.46e-01 |
| ec00362__PK__KEGG | 19 | Up | 2.86e-01 | 7.46e-01 |
| ec00510__PK__KEGG | 3 | Up | 3.12e-01 | 7.46e-01 |
| ec00380__PK__KEGG | 61 | Up | 3.19e-01 | 7.46e-01 |
| ec00564__PK__KEGG | 53 | Up | 3.29e-01 | 7.46e-01 |
| ec00740__PK__KEGG | 8 | Up | 3.30e-01 | 7.46e-01 |
| ec00633__PK__KEGG | 4 | Up | 3.46e-01 | 7.46e-01 |
| ec00760__PK__KEGG | 12 | Up | 3.48e-01 | 7.46e-01 |
| ec00930__PK__KEGG | 7 | Up | 3.57e-01 | 7.46e-01 |
| ec00040__PK__KEGG | 6 | Up | 3.58e-01 | 7.46e-01 |
| ec00970__PK__KEGG | 41 | Down | 3.68e-01 | 7.46e-01 |
| ec00906__PK__KEGG | 13 | Up | 3.69e-01 | 7.46e-01 |
| ec01057__PK__KEGG | 42 | Up | 3.76e-01 | 7.46e-01 |
| ec00981__PK__KEGG | 38 | Up | 3.78e-01 | 7.46e-01 |
| ec00627__PK__KEGG | 61 | Up | 3.83e-01 | 7.46e-01 |
| ec00253__PK__KEGG | 51 | Up | 3.84e-01 | 7.46e-01 |
| ec00642__PK__KEGG | 13 | Up | 4.05e-01 | 7.46e-01 |
| ec01056__PK__KEGG | 3 | Up | 4.10e-01 | 7.46e-01 |
| ec00340__PK__KEGG | 46 | Up | 4.15e-01 | 7.46e-01 |
| ec00940__PK__KEGG | 48 | Up | 4.19e-01 | 7.46e-01 |
| ec00625__PK__KEGG | 4 | Down | 4.30e-01 | 7.46e-01 |
| ec00231__PK__KEGG | 11 | Up | 4.41e-01 | 7.46e-01 |
| ec00230__PK__KEGG | 78 | Down | 4.49e-01 | 7.46e-01 |
| ec00785__PK__KEGG | 2 | Up | 4.50e-01 | 7.46e-01 |
| ec00626__PK__KEGG | 13 | Up | 4.74e-01 | 7.46e-01 |
| ec00903__PK__KEGG | 16 | Up | 4.77e-01 | 7.46e-01 |
| ec00591__PK__KEGG | 7 | Down | 4.77e-01 | 7.46e-01 |
| ec00950__PK__KEGG | 48 | Up | 4.79e-01 | 7.46e-01 |
| ec00630__PK__KEGG | 9 | Up | 4.82e-01 | 7.46e-01 |
| ec00400__PK__KEGG | 8 | Up | 4.91e-01 | 7.46e-01 |
| ec00350__PK__KEGG | 50 | Up | 4.94e-01 | 7.46e-01 |
| ec00360__PK__KEGG | 49 | Up | 5.09e-01 | 7.46e-01 |
| ec00364__PK__KEGG | 6 | Up | 5.17e-01 | 7.46e-01 |
| ec01051__PK__KEGG | 36 | Up | 5.23e-01 | 7.46e-01 |
| ec00281__PK__KEGG | 4 | Up | 5.31e-01 | 7.46e-01 |
| ec00750__PK__KEGG | 2 | Up | 5.36e-01 | 7.46e-01 |
| ec00061__PK__KEGG | 9 | Up | 5.36e-01 | 7.46e-01 |
| ec00450__PK__KEGG | 41 | Up | 5.44e-01 | 7.46e-01 |
| ec00053__PK__KEGG | 7 | Up | 5.46e-01 | 7.46e-01 |
| ec00904__PK__KEGG | 12 | Up | 5.46e-01 | 7.46e-01 |
| ec00982__PK__KEGG | 3 | Down | 5.58e-01 | 7.46e-01 |
| ec00330__PK__KEGG | 27 | Up | 5.61e-01 | 7.46e-01 |
| ec00966__PK__KEGG | 3 | Down | 5.79e-01 | 7.46e-01 |
| ec00140__PK__KEGG | 3 | Down | 5.79e-01 | 7.46e-01 |
| ec00624__PK__KEGG | 36 | Up | 5.81e-01 | 7.46e-01 |
| ec00521__PK__KEGG | 5 | Down | 5.88e-01 | 7.46e-01 |
| ec00941__PK__KEGG | 36 | Up | 5.89e-01 | 7.46e-01 |
| ec00945__PK__KEGG | 36 | Up | 5.89e-01 | 7.46e-01 |
| ec00071__PK__KEGG | 18 | Up | 6.42e-01 | 8.04e-01 |
| ec00480__PK__KEGG | 25 | Up | 6.91e-01 | 8.50e-01 |
| ec00830__PK__KEGG | 5 | Down | 7.12e-01 | 8.50e-01 |
| ec00908__PK__KEGG | 2 | Up | 7.15e-01 | 8.50e-01 |
| ec00960__PK__KEGG | 18 | Up | 7.17e-01 | 8.50e-01 |
| ec00310__PK__KEGG | 40 | Up | 7.26e-01 | 8.50e-01 |
| ec00300__PK__KEGG | 19 | Up | 7.31e-01 | 8.50e-01 |
| ec00130__PK__KEGG | 40 | Up | 7.33e-01 | 8.50e-01 |
| ec00500__PK__KEGG | 5 | Down | 7.44e-01 | 8.53e-01 |
| ec00240__PK__KEGG | 72 | Up | 7.73e-01 | 8.78e-01 |
| ec00780__PK__KEGG | 13 | Up | 7.95e-01 | 8.86e-01 |
| ec00640__PK__KEGG | 17 | Up | 7.97e-01 | 8.86e-01 |
| ec00270__PK__KEGG | 49 | Up | 8.28e-01 | 9.12e-01 |
| ec00520__PK__KEGG | 21 | Down | 8.39e-01 | 9.14e-01 |
| ec00051__PK__KEGG | 20 | Down | 8.51e-01 | 9.14e-01 |
| ec00680__PK__KEGG | 24 | Up | 8.55e-01 | 9.14e-01 |
| ec00622__PK__KEGG | 4 | Up | 8.71e-01 | 9.22e-01 |
| ec00620__PK__KEGG | 23 | Up | 8.90e-01 | 9.30e-01 |
| ec00363__PK__KEGG | 6 | Down | 9.00e-01 | 9.30e-01 |
| ec00790__PK__KEGG | 9 | Down | 9.05e-01 | 9.30e-01 |
| ec00410__PK__KEGG | 4 | Down | 9.15e-01 | 9.32e-01 |
| ec00052__PK__KEGG | 8 | Down | 9.27e-01 | 9.35e-01 |
| ec00592__PK__KEGG | 9 | Down | 9.51e-01 | 9.51e-01 |
We now test using roast and camera for deregulation of gene sets obtained from the papers:
Daily, J. P., D. Scanfeld, N. Pochet, K. Le Roch, D. Plouffe, M. Kamal, O. Sarr, et al. 2007. “Distinct Physiological States of Plasmodium Falciparum in Malaria-Infected Patients.” Nature 450 (7172): 1091–95.
Shock, Jennifer L., Kael F. Fischer, and Joseph L. DeRisi. 2007. “Whole-Genome Analysis of mRNA Decay in Plasmodium Falciparum Reveals a Global Lengthening of mRNA Half-Life during the Intra-Erythrocytic Development Cycle.” Genome Biology 8 (7): R134.
setwd(wd)
# Load gene lists from Daily et al and Shock et al
daily_figure2 <- fread("./data/daily_expression_figure2.csv", data.table = FALSE, header = TRUE)
JLshock <- c("PF3D7_0320800", "PF3D7_0410400", "PF3D7_0507600", "PF3D7_0520300", "PF3D7_0720000", "PF3D7_0811300", "PF3D7_0819900", "PF3D7_0909400", "PF3D7_0909900",
"PF3D7_1006100", "PF3D7_1032100", "PF3D7_1103800", "PF3D7_1106300", "PF3D7_1107000", "PF3D7_1124400", "PF3D7_1128600", "PF3D7_1209200", "PF3D7_1224300",
"PF3D7_1235300", "PF3D7_1307000", "PF3D7_1308900", "PF3D7_1325000", "PF3D7_1340100", "PF3D7_1364500", "PF3D7_1427800", "PF3D7_1443300", "PF3D7_1443500",
"PF3D7_1449700", "PF3D7_0519500")
# Load entrex geneID mappings
entrez_geneID_mappings <- fread("./data/geneID_mappings.txt", data.table = FALSE, stringsAsFactors = FALSE)
upcluster2 <- daily_figure2$Gene[daily_figure2$`Up regulated in Cluster 2?` == "Y"]
upcluster1 <- daily_figure2$Gene[daily_figure2$`Up regulated in Cluster 2?` == "N"]
glycolisis <- daily_figure2$Gene[daily_figure2$type == "Glycolisis"]
tricarboxylic <- daily_figure2$Gene[daily_figure2$type == "Tricarboxylic acid cycle"]
fatty_acid <- daily_figure2$Gene[daily_figure2$type == "Fatty acid metabolism"]
upcluster2 <- as.vector(geneID_mappings$current[geneID_mappings$old %in% upcluster2])
upcluster1 <- as.vector(geneID_mappings$current[geneID_mappings$old %in% upcluster1])
glycolisis <- as.vector(geneID_mappings$current[geneID_mappings$old %in% glycolisis])
tricarboxylic <- as.vector(geneID_mappings$current[geneID_mappings$old %in% tricarboxylic])
fatty_acid <- as.vector(geneID_mappings$current[geneID_mappings$old %in% fatty_acid])
indices <- ids2indices(list(up_in_starvation = upcluster1, up_int_vitro = upcluster2, glycolisis = glycolisis, tricarboxylic = tricarboxylic, fatty_acid = fatty_acid,
mRNA_degradation = JLshock), rownames(v2$E))
mroast(v2, index = indices, design = modRUV, contrast = 2, nrot = 10000, set.statistic = "floormean")
## NGenes PropDown PropUp Direction PValue FDR PValue.Mixed FDR.Mixed
## up_int_vitro 12 0.8333333 0.00000000 Down 0.01129887 0.02812219 0.01249875 0.01493851
## glycolisis 19 0.5789474 0.05263158 Down 0.01309869 0.02812219 0.01009899 0.01493851
## mRNA_degradation 29 0.2758621 0.06896552 Down 0.01459854 0.02812219 0.00769923 0.01493851
## tricarboxylic 11 0.1818182 0.36363636 Up 0.01879812 0.02812219 0.00129987 0.00749925
## up_in_starvation 33 0.1818182 0.21212121 Up 0.06249375 0.07493251 0.00929907 0.01493851
## fatty_acid 17 0.1764706 0.11764706 Up 0.12558744 0.12558744 0.07129287 0.07129287
camera(v2, index = indices, design = modRUV, contrast = 2)
## NGenes Direction PValue FDR
## up_int_vitro 12 Down 1.470968e-05 8.825807e-05
## glycolisis 19 Down 1.322405e-03 3.967216e-03
## mRNA_degradation 29 Down 8.826335e-02 1.765267e-01
## up_in_starvation 33 Up 2.390539e-01 3.166989e-01
## tricarboxylic 11 Up 2.639157e-01 3.166989e-01
## fatty_acid 17 Up 3.466823e-01 3.466823e-01
setwd(wd)
sessionInfo()
## R version 3.4.3 (2017-11-30)
## Platform: x86_64-apple-darwin15.6.0 (64-bit)
## Running under: OS X El Capitan 10.11.6
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
##
## locale:
## [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8
##
## attached base packages:
## [1] grid stats4 parallel stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] pheatmap_1.0.8 knitr_1.17 stringr_1.2.0 dplyr_0.7.4 data.table_1.10.4-3
## [6] VennDiagram_1.6.18 futile.logger_1.4.3 RColorBrewer_1.1-2 EDASeq_2.10.0 ShortRead_1.34.2
## [11] GenomicAlignments_1.12.2 SummarizedExperiment_1.6.5 DelayedArray_0.2.7 matrixStats_0.52.2 Rsamtools_1.28.0
## [16] GenomicRanges_1.28.6 GenomeInfoDb_1.12.3 Biostrings_2.44.2 XVector_0.16.0 IRanges_2.10.5
## [21] S4Vectors_0.14.7 BiocParallel_1.10.1 Biobase_2.36.2 BiocGenerics_0.22.1 reshape2_1.4.3
## [26] ggplot2_2.2.1 ruv_0.9.6 quadprog_1.5-5 edgeR_3.18.1 limma_3.32.10
##
## loaded via a namespace (and not attached):
## [1] bit64_0.9-7 splines_3.4.3 R.utils_2.6.0 assertthat_0.2.0 statmod_1.4.30 highr_0.6
## [7] aroma.light_3.6.0 latticeExtra_0.6-28 blob_1.1.0 GenomeInfoDbData_0.99.0 yaml_2.1.16 RSQLite_2.0
## [13] backports_1.1.2 lattice_0.20-35 glue_1.2.0 digest_0.6.13 colorspace_1.3-2 htmltools_0.3.6
## [19] Matrix_1.2-12 R.oo_1.21.0 plyr_1.8.4 pkgconfig_2.0.1 XML_3.98-1.9 biomaRt_2.32.1
## [25] genefilter_1.58.1 zlibbioc_1.22.0 xtable_1.8-2 scales_0.5.0 tibble_1.3.4 annotate_1.54.0
## [31] GenomicFeatures_1.28.5 lazyeval_0.2.1 survival_2.41-3 magrittr_1.5 memoise_1.1.0 evaluate_0.10.1
## [37] R.methodsS3_1.7.1 hwriter_1.3.2 tools_3.4.3 formatR_1.5 munsell_0.4.3 locfit_1.5-9.1
## [43] bindrcpp_0.2 lambda.r_1.2 AnnotationDbi_1.38.2 compiler_3.4.3 DESeq_1.28.0 rlang_0.1.6
## [49] RCurl_1.95-4.8 labeling_0.3 bitops_1.0-6 rmarkdown_1.8 gtable_0.2.0 DBI_0.7
## [55] R6_2.2.2 rtracklayer_1.36.6 bit_1.1-12 bindr_0.1 rprojroot_1.3-1 futile.options_1.0.0
## [61] stringi_1.1.6 Rcpp_0.12.14 geneplotter_1.54.0